Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L03
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   326   3e-90
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   326   3e-90
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   2.1  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.3  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.3  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   8.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  326 bits (801), Expect = 3e-90
 Identities = 154/275 (56%), Positives = 195/275 (70%)
 Frame = +3

Query: 72  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 252 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 431
           DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 432 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 611
           NW+             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 612 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKL 791
           MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I            +RW TK+L
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238

Query: 792 PX*DTQGSXGKLPALELGILLGVSFTVXRAGQKGY 896
           P   T     K+  +       V +TV RAG  GY
Sbjct: 239 PR-KTHRGLRKVACIGAWHPANVQWTVARAGNAGY 272


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  326 bits (800), Expect = 3e-90
 Identities = 153/275 (55%), Positives = 195/275 (70%)
 Frame = +3

Query: 72  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 251
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 252 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 431
           DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 432 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 611
           NW+             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 612 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKL 791
           MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I            +RW TK+L
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL 238

Query: 792 PX*DTQGSXGKLPALELGILLGVSFTVXRAGQKGY 896
           P   T     K+  +       V +TV RAG  GY
Sbjct: 239 PR-KTHRGLRKVACIGAWHPANVQWTVARAGNAGY 272


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +3

Query: 39  DLIFSLRLSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIG 215
           D I  L LS      K    R+ S   +P     +  G  K FP D+P S P+  +   G
Sbjct: 282 DSILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPG 341

Query: 216 YKAGMTHVVREPDRPGSKI 272
                T  ++ P++   +I
Sbjct: 342 EDVNFTVALKVPEKSNKEI 360


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 540 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 650
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 346 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 498
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 248 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 84
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,705,273
Number of Sequences: 5004
Number of extensions: 77104
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)