Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L02
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical pr...    32   0.51 
AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical pr...    29   6.3  
EF601082-1|ABQ96204.1|  370|Caenorhabditis elegans UNC-55a isofo...    29   6.3  
EF601077-1|ABQ96199.1|  357|Caenorhabditis elegans UNC-55b isofo...    29   6.3  

>Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical
           protein M162.7 protein.
          Length = 690

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +2

Query: 269 TSLPSLIKQIKQKLKVPVTRAKKMPLRNQQFKQMGKCQQLRKKLKVQ 409
           TSL +L+K +  K+  P+ + +K+P   + FK++ K  +LRK L  Q
Sbjct: 205 TSLLNLLKDV-DKMSEPLEQLQKLPSVFEPFKEVSKFMRLRKTLPHQ 250


>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = +2

Query: 224 KLKRNHVPKTNKPS*TSLP--SLIKQIKQKLKVPVTRAKKMPLRNQQFKQMGK--CQQLR 391
           +L +N + K  + S T +   S  K++ + L+  +T A+   +  Q     GK     LR
Sbjct: 78  QLIKNKLEKDFEGSGTKIRNCSSCKEVSENLQFCITCAQSQDILKQPSNN-GKWIAVPLR 136

Query: 392 KKLKVQILVAPMMSHQDRHLSPTKQLXNL 478
           K L +  L   ++ H++  L+P   L NL
Sbjct: 137 KDLSIICLSCGVLEHKEHELAPIDMLENL 165


>Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical
           protein F55D12.4 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 287 IKQIKQKLKVPVTRAKKMPLRNQQFKQMGKCQQLRKKLK 403
           I++I +KLK  V    KM  R++++ Q+ +C QL K  +
Sbjct: 342 IEEIVEKLKSAVDEYCKMNKRSERYHQICECLQLLKSTR 380


>EF601082-1|ABQ96204.1|  370|Caenorhabditis elegans UNC-55a isoform
           protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 287 IKQIKQKLKVPVTRAKKMPLRNQQFKQMGKCQQLRKKLK 403
           I++I +KLK  V    KM  R++++ Q+ +C QL K  +
Sbjct: 288 IEEIVEKLKSAVDEYCKMNKRSERYHQICECLQLLKSTR 326


>EF601077-1|ABQ96199.1|  357|Caenorhabditis elegans UNC-55b isoform
           protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 287 IKQIKQKLKVPVTRAKKMPLRNQQFKQMGKCQQLRKKLK 403
           I++I +KLK  V    KM  R++++ Q+ +C QL K  +
Sbjct: 275 IEEIVEKLKSAVDEYCKMNKRSERYHQICECLQLLKSTR 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,426,204
Number of Sequences: 27780
Number of extensions: 221148
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)