Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_L01
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    98   1e-21
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    29   0.66 
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   4.7  
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch...    26   8.1  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    26   8.1  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 47/114 (41%), Positives = 73/114 (64%)
 Frame = +2

Query: 236 FKSKKPFIIRKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQFLVI 415
           FK    F  RK E   I+ K+P +IP+I E+  K  ++  +DKKK+LVP D+T+ QF+ +
Sbjct: 5   FKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKS-DIAAIDKKKYLVPSDLTVGQFVYV 63

Query: 416 IRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFG 577
           IR RI++ P +A+++ I+     + +L M+  YE +  EDGFLYITY+ +  FG
Sbjct: 64  IRKRIKLSPEKAIFIFIDEILPPTAAL-MSTIYEEHKSEDGFLYITYSGENTFG 116



 Score = 32.3 bits (70), Expect = 0.094
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 578 YQDDMQ-EKSNREVEAIRHRFPNKVPLYVTRYVRXREVPVLGRTKFLVP 721
           ++DD   EK   E + IR ++P+++P+ +   V   ++  + + K+LVP
Sbjct: 5   FKDDFSFEKRKTESQRIREKYPDRIPV-ICEKVDKSDIAAIDKKKYLVP 52



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 649 PAVRDQIRKXS*GASIRENKVLSAQELTMSQFLYIIXPR 765
           P + +++ K S  A+I + K L   +LT+ QF+Y+I  R
Sbjct: 30  PVICEKVDK-SDIAAIDKKKYLVPSDLTVGQFVYVIRKR 67


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
 Frame = +2

Query: 134 IHRAIHNATSALAMELNFITTLIKHDVNHNVKQ----CFKSKKPFIIRKEEVMAIKSKFP 301
           +  +I N    L +E N     +  D N N KQ    C+++KKP I+++ ++   K  FP
Sbjct: 8   VRASISNTLVTLTIEGNNDRYQVILDKNVNAKQFVKTCWRNKKPLIVKEGKIFVDKG-FP 66

Query: 302 -----TKIPLIVERYHKERNLPT 355
                T +  + E+Y     LP+
Sbjct: 67  FDPCRTFLEALYEKYSYSSPLPS 89


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 385 FRD*KFFFVQCWQISLFMI 329
           FR+ KFFF++C+ ++L+ I
Sbjct: 136 FRNHKFFFLECFYLNLYSI 154


>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
           Cka1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 470 NRSMLSMSLTMAQAYENYGDEDGFLYITYAS-QEVFGYQDDMQ 595
           N++  +  +++++ Y +  +E    Y  Y + QEVFGYQD+ +
Sbjct: 2   NQTEAAPVVSVSRVYAHVNEEMPREYWDYENMQEVFGYQDNYE 44


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 636 KRCLMASTSRFDFSCISSW 580
           KRC++A +   D SCI +W
Sbjct: 6   KRCVLAYSGGLDTSCILAW 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,229
Number of Sequences: 5004
Number of extensions: 69694
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)