Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_L01
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 100 2e-21
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 97 1e-20
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 66 5e-11
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 48 1e-05
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 46 3e-05
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 29 4.9
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 100 bits (239), Expect = 2e-21
Identities = 47/114 (41%), Positives = 75/114 (65%)
Frame = +2
Query: 236 FKSKKPFIIRKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQFLVI 415
FK + P R+ E I+ K+ +IP+IVE+ K ++P +DKKK+LVP D+T+ QF+ +
Sbjct: 170 FKLEHPLERRQAESARIREKYSDRIPVIVEKADKT-DVPEIDKKKYLVPADLTVGQFVYV 228
Query: 416 IRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFG 577
+R RI++ P +A+++ + N + SL M+ YE DEDGFLY+TY+ + FG
Sbjct: 229 VRKRIKLSPEKAIFVFVKNTLPPTASL-MSAIYEENKDEDGFLYMTYSGENTFG 281
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 97.5 bits (232), Expect = 1e-20
Identities = 44/117 (37%), Positives = 74/117 (63%)
Frame = +2
Query: 227 KQCFKSKKPFIIRKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQF 406
K FK R+ E I+ K+ +IP+IVE+ + ++P +DKKK+LVP D+T+ QF
Sbjct: 3 KSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERS-DIPDIDKKKYLVPADLTVGQF 61
Query: 407 LVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFG 577
+ ++R RI++ P +A+++ + N ++ + M+ YE DEDGFLY+TY+ + FG
Sbjct: 62 VYVVRKRIKLSPEKAIFIFVKN-TLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 65.7 bits (153), Expect = 5e-11
Identities = 26/70 (37%), Positives = 47/70 (67%)
Frame = +2
Query: 368 KFLVPEDITMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLY 547
++LVP D+T+ QF+ ++R RI++ +A+++ + N ++ + M+ YE DEDGFLY
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN-TLPPTAALMSAIYEENKDEDGFLY 1942
Query: 548 ITYASQEVFG 577
+TY+ + FG
Sbjct: 1943 MTYSGENTFG 1952
Score = 35.1 bits (77), Expect = 0.075
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +2
Query: 263 RKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKK 370
R+ E I+ K+P +IP+IVE+ + ++P +DKKK
Sbjct: 1808 RQAEANRIREKYPDRIPVIVEKAERS-DIPDIDKKK 1842
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 48.0 bits (109), Expect = 1e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 374 LVPEDITMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDE-DGFLYI 550
++ E + S + + ++ + P AL++ +NN + L M YE+Y DE DGFLY+
Sbjct: 206 VIVEKFSRSNLPEMEKRKLHLSPGTALFVFVNNTLPQTAQL-MGSVYESYKDEGDGFLYL 264
Query: 551 TYASQEVFG 577
Y+S++ FG
Sbjct: 265 CYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +2
Query: 419 RNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDE-DGFLYITYASQEVFG 577
+ ++ + P AL++ +NN + L M YE+Y DE DGFLY+ Y+S++ FG
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQL-MGSVYESYKDEGDGFLYLCYSSEKTFG 87
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 392 TMSQFLVIIRNRIRVKPNQALYLIINNRSMLSMSLT--MAQAYENYGDEDGFLYITYASQ 565
++S ++ I VK + LY + R L +S+T +AQ+YE E Q
Sbjct: 354 SVSMICAMLLEFIEVKGSFQLYYY-HGRDFLVLSMTAQLAQSYEGLKQEHDKKIGLLRKQ 412
Query: 566 EVFGYQDDMQEKSNREVEAI 625
EV G EK+ E+E++
Sbjct: 413 EVKGVDYLKMEKNKMEIESL 432
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,760,240
Number of Sequences: 37544
Number of extensions: 425381
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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