Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_L01
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical pr... 123 2e-28
U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap a... 103 2e-22
AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A recept... 103 2e-22
AF024503-14|AAG24088.2| 292|Caenorhabditis elegans Serpentine r... 31 1.1
Z81074-7|CAB03042.1| 495|Caenorhabditis elegans Hypothetical pr... 30 1.9
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 7.7
AL132951-2|CAC44305.1| 561|Caenorhabditis elegans Hypothetical ... 28 7.7
AL132877-18|CAC70116.1| 362|Caenorhabditis elegans Hypothetical... 28 7.7
AL032643-7|CAA21659.2| 362|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical
protein ZK593.6 protein.
Length = 130
Score = 123 bits (296), Expect = 2e-28
Identities = 52/114 (45%), Positives = 83/114 (72%)
Frame = +2
Query: 236 FKSKKPFIIRKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQFLVI 415
FK ++PF R+++V I+S+ P K+P+I+ER+ ER+LP +D+ KFLVPE IT+++ + I
Sbjct: 17 FKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSI 76
Query: 416 IRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFG 577
+R R+++ P QA +L++N RSM+S S++M+ Y D DGF+Y+ Y SQ FG
Sbjct: 77 VRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 608 REVEAIRHRFPNKVPLYVTRYVRXREVPVLGRTKFLVPRN 727
++VE IR + PNKVP+ + R+ R +P++ R KFLVP +
Sbjct: 28 KDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEH 67
>U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap and
gate-16 familyprotein 1 protein.
Length = 123
Score = 103 bits (246), Expect = 2e-22
Identities = 51/125 (40%), Positives = 82/125 (65%)
Frame = +2
Query: 224 VKQCFKSKKPFIIRKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQ 403
+K +K + F R+ E I+ K+P +IP+IVE+ K + L LDKKK+LVP D+T+ Q
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVPSDLTVGQ 59
Query: 404 FLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFGYQ 583
F +IR RI+++P AL+ +NN +M+ TM Q Y+++ +ED FLYI Y+ + V+G +
Sbjct: 60 FYFLIRKRIQLRPEDALFFFVNNVIPQTMT-TMGQLYQDHHEEDLFLYIAYSDESVYGGE 118
Query: 584 DDMQE 598
+ +E
Sbjct: 119 VEKKE 123
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 596 EKSNREVEAIRHRFPNKVPLYVTRYVRXREVPVLGRTKFLVP 721
EK E + IR ++P+++P+ V + + + + L + K+LVP
Sbjct: 12 EKRRAEGDKIRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVP 52
>AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A
receptor-associated protein protein.
Length = 123
Score = 103 bits (246), Expect = 2e-22
Identities = 51/125 (40%), Positives = 82/125 (65%)
Frame = +2
Query: 224 VKQCFKSKKPFIIRKEEVMAIKSKFPTKIPLIVERYHKERNLPTLDKKKFLVPEDITMSQ 403
+K +K + F R+ E I+ K+P +IP+IVE+ K + L LDKKK+LVP D+T+ Q
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVPSDLTVGQ 59
Query: 404 FLVIIRNRIRVKPNQALYLIINNRSMLSMSLTMAQAYENYGDEDGFLYITYASQEVFGYQ 583
F +IR RI+++P AL+ +NN +M+ TM Q Y+++ +ED FLYI Y+ + V+G +
Sbjct: 60 FYFLIRKRIQLRPEDALFFFVNNVIPQTMT-TMGQLYQDHHEEDLFLYIAYSDESVYGGE 118
Query: 584 DDMQE 598
+ +E
Sbjct: 119 VEKKE 123
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +2
Query: 596 EKSNREVEAIRHRFPNKVPLYVTRYVRXREVPVLGRTKFLVP 721
EK E + IR ++P+++P+ V + + + + L + K+LVP
Sbjct: 12 EKRRAEGDKIRRKYPDRIPVIVEKAPKSK-LHDLDKKKYLVP 52
>AF024503-14|AAG24088.2| 292|Caenorhabditis elegans Serpentine
receptor, class x protein21 protein.
Length = 292
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = -1
Query: 373 KFFFVQCWQISLFMISLND*WYFGGEFTLDCHYFFFSDNKWLFGF 239
KF W I LF+ +L +YF L CH FF+SD + FGF
Sbjct: 121 KFMVAFSWLIGLFICTL---FYF----ILGCH-FFYSDTSFTFGF 157
>Z81074-7|CAB03042.1| 495|Caenorhabditis elegans Hypothetical
protein F32B6.8b protein.
Length = 495
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 508 SLRKLWG*RWIPLHHLRLSRGVRLPG 585
S++ ++G R+ PLHH ++GV +PG
Sbjct: 12 SVKPVYGARYPPLHHASPTKGVEIPG 37
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 320 VERYHKERNLPTLDKKKFLVPE 385
+E+YHK+RN+ + K + LVPE
Sbjct: 3258 MEKYHKDRNVRSSGKSEELVPE 3279
>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 430 DPVSDDNQKLRHGDIFRD*KFFFVQC 353
D + D++QKLRH I D +F V+C
Sbjct: 202 DEMVDEDQKLRHAKIDEDNEFVDVEC 227
>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
protein T12A7.5 protein.
Length = 1076
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 430 DPVSDDNQKLRHGDIFRD*KFFFVQC 353
D + D++QKLRH I D +F V+C
Sbjct: 202 DEMVDEDQKLRHAKIDEDNEFVDVEC 227
>AL132951-2|CAC44305.1| 561|Caenorhabditis elegans Hypothetical
protein Y67H2A.4a protein.
Length = 561
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 356 LDKKKFLVPEDITMSQFLVIIRNRIRVKPNQALYLIINN 472
LDK++F + + MSQ V R+R + PNQ+ + N+
Sbjct: 318 LDKEEFTKVQQLIMSQTTVGQRHRDHITPNQSFRVETNS 356
>AL132877-18|CAC70116.1| 362|Caenorhabditis elegans Hypothetical
protein Y54E5A.1 protein.
Length = 362
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 179 LNFITTLIKHDVNHNVKQCFKSKKPFIIRKEEVMAIKSKFPTKIPLIV--ERYHKERN 346
+N TL HD++HN F +K P K + + P +P+ V ++YH E +
Sbjct: 80 INHAMTLAIHDISHNT--AFGNKYPL---KNRFFGMWANLPIAVPISVSFKKYHVEHH 132
>AL032643-7|CAA21659.2| 362|Caenorhabditis elegans Hypothetical
protein Y54E5A.1 protein.
Length = 362
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 179 LNFITTLIKHDVNHNVKQCFKSKKPFIIRKEEVMAIKSKFPTKIPLIV--ERYHKERN 346
+N TL HD++HN F +K P K + + P +P+ V ++YH E +
Sbjct: 80 INHAMTLAIHDISHNT--AFGNKYPL---KNRFFGMWANLPIAVPISVSFKKYHVEHH 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,716
Number of Sequences: 27780
Number of extensions: 388293
Number of successful extensions: 993
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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