Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_K23
(913 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900... 141 8e-34
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 39 0.006
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297... 33 0.24
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 32 0.73
09_04_0429 + 17495675-17496409 31 1.3
08_02_1005 + 23468230-23468994 30 2.9
11_01_0551 + 4361640-4363386,4363443-4363687 29 5.1
01_05_0488 - 22647196-22647561,22647847-22647999,22648716-226496... 29 5.1
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 28 9.0
>03_02_0509 -
9003330-9003446,9003587-9003673,9004113-9004280,
9004835-9004957,9005081-9005170,9005275-9005295
Length = 201
Score = 141 bits (341), Expect = 8e-34
Identities = 67/133 (50%), Positives = 93/133 (69%)
Frame = +1
Query: 226 YTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDD 405
+ GTS +QDTRFS+K+ KL+K KF L VDM+KVK+DV+KPWI ++TE+L ED+
Sbjct: 6 FRGTSADQDTRFSNKQAKLLKTQKFAPELEHLVDMTKVKMDVMKPWIATRVTELLGFEDE 65
Query: 406 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWELLLSAQASENGIPESFTQ 585
V+I ++ LEEK KK+QI LTGF+ KN FM ELW LLLSAQ + +G+P+ F
Sbjct: 66 VLINFIYGLLEEKEADGKKIQIQLTGFME-KNTVKFMKELWSLLLSAQQNASGVPQQFLD 124
Query: 586 QKKEEIKKRMEEQ 624
K+ EI+++ E+
Sbjct: 125 AKEAEIQQKKAEE 137
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/63 (25%), Positives = 37/63 (58%)
Frame = +1
Query: 352 LKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWE 531
++PWI +KI E L E+ +++Y+ + ++ K +++ L L+ A +F+ ++W
Sbjct: 843 MRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQASKMLEL-LQSILD-VEAEMFVLKMWR 900
Query: 532 LLL 540
+L+
Sbjct: 901 MLI 903
>10_08_0105 -
14828097-14828226,14828371-14828547,14829690-14829739,
14829841-14829909,14829976-14830074,14830148-14830226,
14830587-14830687,14830794-14830862,14831019-14831059,
14831313-14831663,14831676-14832511,14832674-14832777,
14833587-14834003,14836108-14836491
Length = 968
Score = 33.5 bits (73), Expect = 0.24
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Frame = +1
Query: 301 GDCLTQQVDMSK-VKLDVLKPWITQKITEIL-NMEDDVVI---EYVTNQLEEKFPCPKKM 465
G + V +SK ++ KP + ++ E+ N+E+D E+V N+L F +
Sbjct: 313 GTLIPADVFISKGTPFNLTKPLVQNQVVELASNIENDPSAAHSEHVGNRLH-MFGNGNSL 371
Query: 466 QINLTGFLNGKNARLFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMEEQQNKDKDK 645
N +G A + +LW L Q+ + +KE++K + Q+N++ K
Sbjct: 372 SENQSGCEKTMIAGSEVSQLWTLAPQMQSDQQSTSAGAHSMQKEDLKLTPDSQENEESKK 431
Query: 646 E 648
+
Sbjct: 432 Q 432
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 31.9 bits (69), Expect = 0.73
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +1
Query: 187 EEVLISPXSKMMMYTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWI 366
E++ P ++++ + +++ T +KKLMK+ + T Q D+S KL KP
Sbjct: 316 EQICNEPCEEVVLKRSSKSKRKT-----DKKLMKKQQHSKKRTAQADVSDAKLCRRKPKK 370
Query: 367 TQKITEILN 393
+ ++EI+N
Sbjct: 371 VRLLSEIIN 379
>09_04_0429 + 17495675-17496409
Length = 244
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +2
Query: 668 GRVPGAALATDGAPELVLVIVPVTESIVTAEVRVDRDGAAARSETRSALRKLXGNXAPSV 847
GRV A AP + L+ +P+ S + E+ A S+TRSA R+L +V
Sbjct: 80 GRVSLAIHEDTRAPPVFLIELPMLTSALHKEISSGVVKLALESDTRSARRRLVEEYVWAV 139
Query: 848 XENGR 862
NGR
Sbjct: 140 YCNGR 144
>08_02_1005 + 23468230-23468994
Length = 254
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +2
Query: 668 GRVPGAALATDGAPELVLVIVPVTESIVTAEVRVDRDGAAARSETRSALRKLXGNXAPSV 847
GR+ A AP L+ +P+ S + E+ A S+TRSA R+L +V
Sbjct: 89 GRLSLAIHEDTRAPPAFLIELPMLASAMHREMATGTVKLALESDTRSARRRLLEEYVWAV 148
Query: 848 XENGR 862
NGR
Sbjct: 149 FCNGR 153
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 535 LLSAQASENGIPESFTQQKKEEIKKRMEEQQNKDKDKE 648
LL+ +A++NG SFT Q E IK++ + + K K K+
Sbjct: 282 LLTERAAQNG---SFTTQAAESIKEKKKRAEKKKKKKK 316
>01_05_0488 -
22647196-22647561,22647847-22647999,22648716-22649663,
22649783-22649830
Length = 504
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 668 GRVPGAALATDGAPELVLVIV 730
GR GAALA DGAPEL ++V
Sbjct: 231 GRGEGAALAIDGAPELRELVV 251
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +1
Query: 571 ESFTQQKKEEIKKRMEEQQNKDKDKE 648
E Q++KEE K+R EE+Q +++++E
Sbjct: 521 EERRQREKEEKKRREEEEQRREEEEE 546
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,114,826
Number of Sequences: 37544
Number of extensions: 382472
Number of successful extensions: 1266
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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