Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_K22
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    27   3.6  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   4.8  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   6.3  
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce...    26   8.3  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   8.3  

>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +2

Query: 374 FEGNTLKQVQKAPXRS*SHLRQGIRP*GDESCDDS*GRDLHQSLQGPVKGLYSEVGSRCR 553
           +EG+TL    K+  R   H R+  R     S + S   + +  ++       SE+ ++ R
Sbjct: 4   YEGDTLNNHGKSSTRQ--HWRK--RSAVSSSLEFSSYEESNSPIENTEVLKVSEIEAKKR 59

Query: 554 RFTNIPRHNYVYLASILYISPF*LFCKTNFSFHI-SHRLPFELQK 685
           R     +H Y+YLA  L+     L C   F F++ ++R  F L K
Sbjct: 60  RRK---KHRYIYLAVCLFFLASVLSCAIIFRFYLHTNRENFSLFK 101


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 493 APESTRSSKRTLLRGRESVPPIHEHPAAQ 579
           AP++T SS   L + ++S+P  +EH  A+
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQRAR 156


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 512 PVKGLYSEVGSRCRRFTNIP 571
           P+ GL+  VGSR R+ + IP
Sbjct: 114 PLSGLHQNVGSRTRKSSGIP 133


>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 871 KKYIYLIRHGNIECDLPEDQNVN 803
           KK +YLIRHG  + ++  D++ N
Sbjct: 6   KKTVYLIRHGQAQHNVGPDEDHN 28


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 548 CRRFTNIPRHNYVYLASILYI 610
           C +F  +PR NY  L S L++
Sbjct: 860 CDQFATVPRENYANLVSQLHV 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,816
Number of Sequences: 5004
Number of extensions: 64142
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)