Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_K21
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       28   1.6  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    28   2.1  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   3.6  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    27   4.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   6.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   6.3  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -1

Query: 331 KTSSSAPFGLASSISVFRTFKSTSPLRQFPKVRNAASTXRDFVFSIVLGALRGHN---RC 161
           KT S+ PF   S++    T  +T P++    VR       +   +I  G   G +     
Sbjct: 561 KTGSNNPFAQFSNLPSQSTAPATKPMKP---VRTGDDRFSNIAQAISTGNPMGTDSFGNI 617

Query: 160 NLTKVISQHTGSE 122
            LT+V +QHTGS+
Sbjct: 618 GLTRVPTQHTGSK 630


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = +3

Query: 258 GLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHIND 437
           GL  +N+L + ++ +K    LD+V     D + +L  C++S+L+  +   G+E    +  
Sbjct: 85  GLKIVNILSS-LDSSKWEAYLDQVVN--ADSADELTVCLTSILKKAKIIPGSEARVFVGY 141

Query: 438 AQNSTNQLI 464
              ST++++
Sbjct: 142 DSRSTSEIL 150


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 304 LASSISVFRTFKSTSPLRQFPKVRNAASTXRDFVFSI 194
           L  S  VFR F+S++P   FP V  A    R F  S+
Sbjct: 9   LQLSWQVFRRFQSSNPQLSFPCVDQAQERSRQFEQSL 45


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = -1

Query: 649 ISSTFAHFSTRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 485
           +  +   F++RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 280 VGGSILEFNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 624 QQGSSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 511
           Q+ SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 376 QRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
 Frame = +3

Query: 159 LQRL*PRNAPRTMLKTKSLXVEAALRTFGNCLKGLVDLNVLKTEIEEAKP-NGALDEVFK 335
           L+ L  +N+ + + +T     E         +K   DLN +    EE +     +D + K
Sbjct: 482 LRLLASKNSDKALAETNIRLQEVTKELETLRMKNSNDLNEIHDLREENEGLTLKIDSITK 541

Query: 336 KYCDKSAQLKGCISSVLQGVRPCVG--NEYANHINDAQNSTNQLIDFVCYKDGD 491
           +      +L+  I S    V    G  +EY N + D + + N++++   YKD D
Sbjct: 542 EKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDND 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,388,663
Number of Sequences: 5004
Number of extensions: 66395
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)