Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_K19
(944 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.58
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 32 0.58
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 3.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 4.1
07_03_1136 + 24218601-24218734,24218769-24219906 29 4.1
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 29 4.1
07_01_0479 + 3606663-3607448 29 5.4
05_01_0142 - 940421-940701,941262-941574 29 5.4
07_03_1160 - 24430240-24431268 28 9.4
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.4
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.3 bits (70), Expect = 0.58
Identities = 28/83 (33%), Positives = 28/83 (33%)
Frame = +2
Query: 620 PPPXAXXXXXXXXXXXXGGXFXGXXXXXPPXRGXGGVXXFWGPLPGXXXPXXPXXPGXXX 799
PPP A GG PP RG GGV GP P P P
Sbjct: 1163 PPPPAGFRGGTPPPNAHGGV----APPPPPPRGHGGVG---GP------PTPPGAPAPPM 1209
Query: 800 XXGXXGXXPPSXGGXRGXPXXXG 868
G G PP GG RG P G
Sbjct: 1210 PPGVPGGPPPPPGG-RGLPAPPG 1231
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/73 (28%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Frame = -3
Query: 915 PPLXGPVGXKVXPGXSPXFXGXPRXPPXEGGXXPXXPXXXXXPGXXG---XXGXXXPGRG 745
PP G +G P F G P GG P P G G G P
Sbjct: 1151 PPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMP 1210
Query: 744 PQKXXTPPSPRXG 706
P PP P G
Sbjct: 1211 PGVPGGPPPPPGG 1223
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 32.3 bits (70), Expect = 0.58
Identities = 25/77 (32%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Frame = +2
Query: 704 PPXRGXGGVXXFWGPLPGXXXPXXPXXPGXXXXXGXXGXXPPSX-GGXRGXPXXXGXXPG 880
PP GG + P G P P G G G PPS GG G P G PG
Sbjct: 338 PPPSSYGGGPGSYPPSYGAPPPNPPYSGGAP---GGQGSLPPSYDGGYGGRPMPGGGGPG 394
Query: 881 KTLXPTGPXRGGXPXXG 931
G GG G
Sbjct: 395 APPPYHGGGGGGGGGGG 411
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -1
Query: 758 NREGGPKXPXPPXPPGXXGGXXXXRXXPPXPLPXDXXXXKGEP 630
NR GP P PP PP + PP P P K P
Sbjct: 722 NRSNGPSAPAPPLPPPLPAA--ANKRNPPAPPPPPLMTGKKAP 762
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 4.1
Identities = 26/87 (29%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Frame = -3
Query: 921 GXPPLXGPVGXKVXP--GXSPXFXGXPRXPPXEGGXXPXXPXXXXXPGXXGXXGXXXPGR 748
G PP P + P G P F P PP G P P PG P
Sbjct: 29 GPPPPQQPAYGHMPPPQGAPPPFLAPP-PPPPPGPPPPHQPQFNFGPGPPQQQQPPPP-- 85
Query: 747 GPQKXXTPPSPRXG-GXXXLXPXKXPP 670
PQ PP P G P PP
Sbjct: 86 -PQMYYQPPPPPPPYGVNSSQPPPPPP 111
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.5 bits (63), Expect = 4.1
Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +2
Query: 746 PLPGXXXPXXPXXPGXXXXXGXXGXXPPSXGGXRGXP-XXXGXXPGKTLXPTGPXRGG 916
PLP P G G G PP GG G P G G P P GG
Sbjct: 82 PLPIKLLGLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGG 139
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +2
Query: 743 GPLPGXXXPXXPXXPGXXXXXGXXGXXPPSXGGXRGXPXXXGXXPGKTLXPTG 901
GP+PG P P PG G P G G G PG+ P G
Sbjct: 530 GPMPGMVFPGRPPQPGGMFPMGLEMMMGPGRGPLMGGLGMGG--PGRPNRPVG 580
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 5.4
Identities = 25/87 (28%), Positives = 27/87 (31%)
Frame = -3
Query: 930 PXXGXPPLXGPVGXKVXPGXSPXFXGXPRXPPXEGGXXPXXPXXXXXPGXXGXXGXXXPG 751
P PP P+ + PG P F G P PP G P G G PG
Sbjct: 175 PPPMRPPQM-PIPFQRPPGVPPAFPGGP--PPPPGPFMRGPPPMGPPQVRPGMPGGPPPG 231
Query: 750 RGPQKXXTPPSPRXGGXXXLXPXKXPP 670
P PP P G P P
Sbjct: 232 MRP---GMPPPPFRPGMPPPPPGPQQP 255
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 29.1 bits (62), Expect = 5.4
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = -3
Query: 921 GXPPLXG--PVGXKVXPGXSPXFXGXPRXPPXEGGXXPXXPXXXXXPGXXGXXGXXXPGR 748
G PP G P G PG P G PP G P G G PG
Sbjct: 28 GYPPHQGYPPQGYPPPPGAYPPPPGA--YPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGG 85
Query: 747 GPQKXXTPPSPRXG 706
PQ PP+ G
Sbjct: 86 YPQHGGYPPAGYPG 99
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Frame = -3
Query: 903 GPVGXKVXPGXSPXFXGXPRXPPXEGGXXPXXPXXXXXPGXXGXXGXXXPGR----GPQK 736
GP+ P +P P PP P P P G P + GP K
Sbjct: 236 GPIKPDQPPQPNPDMPPKPDQPPQPCPDGPPKPDQPPQPNPNGPPKPDQPPQPNPNGPSK 295
Query: 735 XXTPPSP 715
PP P
Sbjct: 296 PDQPPRP 302
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 9.4
Identities = 20/72 (27%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Frame = -3
Query: 915 PPLXGPVGXKVXPGXSPXFXGXPRXPPXEGGXXPXXPXXXXXPGXX-GXXGXXXPGRGPQ 739
PP P P P P PP +G P P G P G +
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Query: 738 KXXTPPSPRXGG 703
K PP P GG
Sbjct: 374 KGGPPPPPPKGG 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,366,533
Number of Sequences: 37544
Number of extensions: 232013
Number of successful extensions: 594
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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