Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_K18
(1195 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ236342-1|ABB43161.1| 649|Homo sapiens RAB11-family interactin... 45 5e-04
BC077720-1|AAH77720.1| 649|Homo sapiens RAB11 family interactin... 45 5e-04
AY280968-1|AAQ18786.1| 1283|Homo sapiens Rab11-family interactin... 45 5e-04
AK026275-1|BAB15424.1| 142|Homo sapiens protein ( Homo sapiens ... 45 5e-04
AF368294-1|AAM09571.1| 649|Homo sapiens Rab-coupling protein pr... 45 5e-04
DQ013303-1|AAY67796.1| 532|Homo sapiens RAB11-FIP2 long isoform... 44 0.001
BC075074-1|AAH75074.1| 512|Homo sapiens RAB11 family interactin... 44 0.001
BC075073-1|AAH75073.1| 512|Homo sapiens RAB11 family interactin... 44 0.001
AY037299-1|AAK68635.1| 512|Homo sapiens nRip11 protein. 44 0.001
AB023158-1|BAA76785.2| 533|Homo sapiens KIAA0941 protein protein. 44 0.001
BC035013-1|AAH35013.1| 652|Homo sapiens RAB11 family interactin... 35 0.67
AF334812-1|AAK20892.1| 653|Homo sapiens Rab11 interacting prote... 35 0.67
AC010913-1|AAX88900.1| 522|Homo sapiens unknown protein. 35 0.67
AB020664-1|BAA74880.1| 733|Homo sapiens KIAA0857 protein protein. 35 0.67
>DQ236342-1|ABB43161.1| 649|Homo sapiens RAB11-family interacting
protein 1C protein.
Length = 649
Score = 45.2 bits (102), Expect = 5e-04
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 170 MWDPTHVQVTVQKARGLLIKGKNGTNNCXVTIALG*RK 283
+W PTHVQVTV +ARGL KG GT++ I +G K
Sbjct: 14 VWSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEK 51
>BC077720-1|AAH77720.1| 649|Homo sapiens RAB11 family interacting
protein 1 (class I) protein.
Length = 649
Score = 45.2 bits (102), Expect = 5e-04
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 170 MWDPTHVQVTVQKARGLLIKGKNGTNNCXVTIALG*RK 283
+W PTHVQVTV +ARGL KG GT++ I +G K
Sbjct: 14 VWSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEK 51
>AY280968-1|AAQ18786.1| 1283|Homo sapiens Rab11-family interacting
protein 1B protein.
Length = 1283
Score = 45.2 bits (102), Expect = 5e-04
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 170 MWDPTHVQVTVQKARGLLIKGKNGTNNCXVTIALG*RK 283
+W PTHVQVTV +ARGL KG GT++ I +G K
Sbjct: 14 VWSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEK 51
>AK026275-1|BAB15424.1| 142|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22622 fis, clone HSI05669. ).
Length = 142
Score = 45.2 bits (102), Expect = 5e-04
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 170 MWDPTHVQVTVQKARGLLIKGKNGTNNCXVTIALG*RK 283
+W PTHVQVTV +ARGL KG GT++ I +G K
Sbjct: 14 VWSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEK 51
>AF368294-1|AAM09571.1| 649|Homo sapiens Rab-coupling protein
protein.
Length = 649
Score = 45.2 bits (102), Expect = 5e-04
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 170 MWDPTHVQVTVQKARGLLIKGKNGTNNCXVTIALG*RK 283
+W PTHVQVTV +ARGL KG GT++ I +G K
Sbjct: 14 VWSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEK 51
>DQ013303-1|AAY67796.1| 532|Homo sapiens RAB11-FIP2 long isoform
protein.
Length = 532
Score = 44.0 bits (99), Expect = 0.001
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 173 WDPTHVQVTVQKARGLLIKGKNGTNNCXVTIALG*RK 283
W PTHVQVTV +A+ L KGK+GTN+ I LG K
Sbjct: 10 WFPTHVQVTVLQAKDLKPKGKSGTNDTYTIIQLGKEK 46
>BC075074-1|AAH75074.1| 512|Homo sapiens RAB11 family interacting
protein 2 (class I) protein.
Length = 512
Score = 44.0 bits (99), Expect = 0.001
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 173 WDPTHVQVTVQKARGLLIKGKNGTNNCXVTIALG*RK 283
W PTHVQVTV +A+ L KGK+GTN+ I LG K
Sbjct: 10 WFPTHVQVTVLQAKDLKPKGKSGTNDTYTIIQLGKEK 46
>BC075073-1|AAH75073.1| 512|Homo sapiens RAB11 family interacting
protein 2 (class I) protein.
Length = 512
Score = 44.0 bits (99), Expect = 0.001
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 173 WDPTHVQVTVQKARGLLIKGKNGTNNCXVTIALG*RK 283
W PTHVQVTV +A+ L KGK+GTN+ I LG K
Sbjct: 10 WFPTHVQVTVLQAKDLKPKGKSGTNDTYTIIQLGKEK 46
>AY037299-1|AAK68635.1| 512|Homo sapiens nRip11 protein.
Length = 512
Score = 44.0 bits (99), Expect = 0.001
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 173 WDPTHVQVTVQKARGLLIKGKNGTNNCXVTIALG*RK 283
W PTHVQVTV +A+ L KGK+GTN+ I LG K
Sbjct: 10 WFPTHVQVTVLQAKDLKPKGKSGTNDTYTIIQLGKEK 46
>AB023158-1|BAA76785.2| 533|Homo sapiens KIAA0941 protein protein.
Length = 533
Score = 44.0 bits (99), Expect = 0.001
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +2
Query: 173 WDPTHVQVTVQKARGLLIKGKNGTNNCXVTIALG*RK 283
W PTHVQVTV +A+ L KGK+GTN+ I LG K
Sbjct: 31 WFPTHVQVTVLQAKDLKPKGKSGTNDTYTIIQLGKEK 67
>BC035013-1|AAH35013.1| 652|Homo sapiens RAB11 family interacting
protein 5 (class I) protein.
Length = 652
Score = 34.7 bits (76), Expect = 0.67
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 173 WDPTHVQVTVQKARGLLIK--GKNGTNNCXVTIALG*RK 283
W PTHVQVTV +ARGL K G T++ I +G K
Sbjct: 16 WLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREK 54
>AF334812-1|AAK20892.1| 653|Homo sapiens Rab11 interacting protein
Rip11a protein.
Length = 653
Score = 34.7 bits (76), Expect = 0.67
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 173 WDPTHVQVTVQKARGLLIK--GKNGTNNCXVTIALG*RK 283
W PTHVQVTV +ARGL K G T++ I +G K
Sbjct: 16 WLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREK 54
>AC010913-1|AAX88900.1| 522|Homo sapiens unknown protein.
Length = 522
Score = 34.7 bits (76), Expect = 0.67
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 173 WDPTHVQVTVQKARGLLIK--GKNGTNNCXVTIALG*RK 283
W PTHVQVTV +ARGL K G T++ I +G K
Sbjct: 16 WLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREK 54
>AB020664-1|BAA74880.1| 733|Homo sapiens KIAA0857 protein protein.
Length = 733
Score = 34.7 bits (76), Expect = 0.67
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 173 WDPTHVQVTVQKARGLLIK--GKNGTNNCXVTIALG*RK 283
W PTHVQVTV +ARGL K G T++ I +G K
Sbjct: 96 WLPTHVQVTVLRARGLRGKSSGAGSTSDAYTVIQVGREK 134
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,691,939
Number of Sequences: 237096
Number of extensions: 1178774
Number of successful extensions: 1387
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16789100150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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