Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_K16
(981 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 44 3e-05
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.027
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.11
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.76
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 7.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.3
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 44.0 bits (99), Expect = 3e-05
Identities = 38/133 (28%), Positives = 42/133 (31%), Gaps = 8/133 (6%)
Frame = +1
Query: 604 SGAPPXPPXXIXGPPRSQEPXKGXPPXXGPXXXPPXT--SGTKXHXPLTSG--PXPXXXQ 771
SG PP P + PP +P PP P PP S P+ SG P P
Sbjct: 1089 SGIPPVPKPSVAAPP-VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147
Query: 772 XXKXGPPPXGXXPXXXXXXXXXXXXXXXXXXPXGXSPSPERXXXXPXRPPPXXEPPXXXP 951
P P G P P P P+ P PPP PP P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP----PVPKPAAGVPPVPPPSEAPPVPKP 1203
Query: 952 ----PXXPPPPGA 978
P PPP A
Sbjct: 1204 SVGVPPVPPPSTA 1216
Score = 35.5 bits (78), Expect = 0.012
Identities = 31/122 (25%), Positives = 34/122 (27%)
Frame = +1
Query: 604 SGAPPXPPXXIXGPPRSQEPXKGXPPXXGPXXXPPXTSGTKXHXPLTSGPXPXXXQXXKX 783
SGAPP P + PP G PP P P P + P P
Sbjct: 1118 SGAPPVPKPSVAAPP--VPVPSGAPPVPKPSVAAPPVPA-----PSGAPPVPKPSVAAPP 1170
Query: 784 GPPPXGXXPXXXXXXXXXXXXXXXXXXPXGXSPSPERXXXXPXRPPPXXEPPXXXPPXXP 963
P P P P P P+ P PPP PP P
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAP----PVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226
Query: 964 PP 969
PP
Sbjct: 1227 PP 1228
Score = 33.9 bits (74), Expect = 0.035
Identities = 29/119 (24%), Positives = 32/119 (26%)
Frame = +1
Query: 613 PPXPPXXIXGPPRSQEPXKGXPPXXGPXXXPPXTSGTKXHXPLTSGPXPXXXQXXKXGPP 792
PP P PP P PP P PP P ++ P P PP
Sbjct: 1012 PPVPKLSSKAPPVPL-PSADAPPIPVPSTAPPVP------IPTSTPPVPKSSSGAPSAPP 1064
Query: 793 PXGXXPXXXXXXXXXXXXXXXXXXPXGXSPSPERXXXXPXRPPPXXEPPXXXPPXXPPP 969
P P P G P P+ P P P P P PP
Sbjct: 1065 PV-PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Score = 32.7 bits (71), Expect = 0.081
Identities = 33/138 (23%), Positives = 34/138 (24%), Gaps = 5/138 (3%)
Frame = +1
Query: 571 PPXAGXGXSXXSGAPPXPPXXIXGPPRSQEPXKGXPPXXGPXXXPPXTSGTKXHXPLTSG 750
P A SGAPP P + PP G PP P P P
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPP--VPAPSGAPPVPKPSVAAPPVPAPSSGIP---- 1179
Query: 751 PXPXXXQXXKXGPPPXGXXPXXXXXXXXXXXXXXXXXXP-----XGXSPSPERXXXXPXR 915
P P PPP P P G P P P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPV 1239
Query: 916 PPPXXEPPXXXPPXXPPP 969
P P E P P P
Sbjct: 1240 PAPSSEAPSVSTPRSSVP 1257
Score = 31.9 bits (69), Expect = 0.14
Identities = 33/127 (25%), Positives = 33/127 (25%), Gaps = 7/127 (5%)
Frame = +1
Query: 613 PPXPPXXIXGPPRSQEPXKGXPPXXGPXXXPPXTSGTKX-----HXPLTSGPXPXXXQXX 777
PP P I P S EP K PP P P TS P S P
Sbjct: 971 PPLPVSNILSSPTS-EPPKDHPPS-APLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPS 1028
Query: 778 KXGPP--PXGXXPXXXXXXXXXXXXXXXXXXPXGXSPSPERXXXXPXRPPPXXEPPXXXP 951
PP P P P P P P P PP P
Sbjct: 1029 ADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP 1088
Query: 952 PXXPPPP 972
PP P
Sbjct: 1089 SGIPPVP 1095
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 34.3 bits (75), Expect = 0.027
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 907 PXRPPPXXEPPXXXPPXXPPPP 972
P PPP PP PP PPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPP 27
Score = 33.9 bits (74), Expect = 0.035
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 907 PXRPPPXXEPPXXXPPXXPPPPG 975
P PPP EPP PP PPPPG
Sbjct: 11 PPPPPPGFEPPSQPPP--PPPPG 31
Score = 31.1 bits (67), Expect = 0.25
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 914 ALPPXXNPPPXPPPXXPPP 970
+LPP PPP PPP PP
Sbjct: 3 SLPPGNPPPPPPPPGFEPP 21
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 938 PPXPPPXXPPPPG 976
PP PP PPPPG
Sbjct: 5 PPGNPPPPPPPPG 17
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.11
Identities = 29/127 (22%), Positives = 33/127 (25%), Gaps = 2/127 (1%)
Frame = +1
Query: 604 SGAPPXPPXXIXGPPRSQEPXKGXPPXXGPXXXPPXTSGTKXHXPLTSGPXPXXXQXXKX 783
S PP PP R P P PP G ++ P +
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR------SAPALPPLGNASRT 412
Query: 784 GPPPXGXXPXXXXXXXXXXXXXXXXXXPXGXSPSPERXXXXPXRPP-PXXEP-PXXXPPX 957
PP P P G +P P PP P P PP
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472
Query: 958 XPPPPGA 978
P PP A
Sbjct: 473 APAPPPA 479
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.9 bits (69), Expect = 0.14
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = -2
Query: 971 GGGGXXGGXXXGGSXXGGGRXGXXXXLSGEGDXPXGXG 858
G GG GG G GGG G L G G P G G
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262
Score = 29.5 bits (63), Expect = 0.76
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -2
Query: 974 PGG-GGXXGGXXXGGSXXGGGRXGXXXXLSGEGDXPXGXGEXGF 846
PGG G GG G GGG G G G P G G G+
Sbjct: 230 PGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = -2
Query: 968 GGGXXG-GXXXGGSXXGGGRXGXXXXLSGEGDXPXGXGEXG 849
GGG G G GG G G G GEG G G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFG 227
Score = 27.5 bits (58), Expect = 3.1
Identities = 24/72 (33%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Frame = -2
Query: 980 PAPGGGGXXGGXXXGG------SXXGGGRXGXXXXLSGEGDXPXGXGEXGFLXCFWXXXX 819
P PGG G GG G GGG G G G P G G G L F
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG--GGLGGFGGGPG 259
Query: 818 XXXGXIPXGGGP 783
G GGP
Sbjct: 260 GFGGGPGGHGGP 271
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.76
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 880 PSPERXXXXPXRPPPXXEPPXXXPPXXPPPPGA 978
P P P PPP PP PPPP A
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Frame = +2
Query: 920 PPXXNPPPX-----PPPXXPPPPGL 979
PP PPP PPP PPPP +
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 916 PPPXXEPPXXXPPXXPPPPG 975
P P P PP PPPPG
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 916 PPPXXEPPXXXPPXXPPPP 972
PPP P PP PPPP
Sbjct: 1716 PPPSAPPMPAGPPSAPPPP 1734
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +1
Query: 865 PXGXSPSPERXXXXPXRPPPXXEPPXXXPPXXPPPPGA 978
P +P P+ P PP PP PP PP A
Sbjct: 1694 PQSAAP-PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSA 1730
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 902 PXXXALPPXXNPPPXPPPXXPPPP 973
P A P P P PPP PPP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPP 1717
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +1
Query: 604 SGAPPXPPXXIXGPPRSQEPXKGXPPXXGPXXXP 705
S P PP PP S P PP P P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 914 ALPPXXNPPPXPPPXXPP 967
+LP NPPP PPP PP
Sbjct: 182 SLPSDYNPPPPPPP--PP 197
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 923 PXXNPPPXPPPXXPP 967
P PPP PPP PP
Sbjct: 234 PLPAPPPPPPPTLPP 248
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 971 GGGGXXGGXXXGGSXXGGGRXGXXXXLSGEGDXPXGXG 858
GG G GG G GGGR G G G G G
Sbjct: 23 GGRGGFGGGRGGAR--GGGRGGARGGRGGRGGARGGRG 58
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -2
Query: 968 GGGXXGGXXXGGSXXGGGRXGXXXXLSGEGDXPXGXG 858
GGG G G GGR G G G G G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +2
Query: 680 PPXGXKXXPPXR-AAPXXTPPSQVAXXRXXXKXXXRAPPP 796
PP PP + AAP +PPS + + PPP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.145 0.506
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,076
Number of Sequences: 5004
Number of extensions: 23608
Number of successful extensions: 234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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