Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_K14
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 360 e-100
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 200 2e-52
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 196 3e-51
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 147 2e-36
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 90 3e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 89 8e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 83 5e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 68 2e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 49 8e-07
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.003
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.16
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.88
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.5
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 28 1.5
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 4.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.2
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 8.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 8.2
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 26 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 360 bits (885), Expect = e-100
Identities = 166/181 (91%), Positives = 173/181 (95%)
Frame = +2
Query: 230 PRIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 409
P IVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFY
Sbjct: 32 PSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFY 91
Query: 410 NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGI 589
NELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGI
Sbjct: 92 NELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGI 151
Query: 590 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAXREIVRD 769
VLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTA REIVRD
Sbjct: 152 VLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRD 211
Query: 770 I 772
I
Sbjct: 212 I 212
Score = 68.5 bits (160), Expect = 1e-12
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = +1
Query: 139 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPS 234
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPS 33
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 200 bits (488), Expect = 2e-52
Identities = 99/219 (45%), Positives = 141/219 (64%), Gaps = 3/219 (1%)
Frame = +2
Query: 230 PRIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY 409
P VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + +
Sbjct: 36 PTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYS 95
Query: 410 NE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG 586
++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTG
Sbjct: 96 DQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTG 155
Query: 587 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAXREIVR 766
IVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++A +EIVR
Sbjct: 156 IVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVR 215
Query: 767 DIXGEXVLXRS--RLPXRXWPXXHPXXPSXSLTXLPDGQ 877
+I + S R W P + LPD Q
Sbjct: 216 EIKEKCCYVASDFRSEIESWTEHKPQIHTYQ---LPDNQ 251
Score = 43.2 bits (97), Expect = 5e-05
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVFPS 234
+ +DNGSG KAGFAGDD P+ +FP+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPT 37
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 196 bits (478), Expect = 3e-51
Identities = 91/183 (49%), Positives = 130/183 (71%), Gaps = 2/183 (1%)
Frame = +2
Query: 230 PRIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHT 403
P IVGRP R + + KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +T
Sbjct: 30 PSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYT 89
Query: 404 FYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 583
F+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++
Sbjct: 90 FFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSS 149
Query: 584 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAXREIV 763
G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA E V
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETV 209
Query: 764 RDI 772
R++
Sbjct: 210 REM 212
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 145 EVAALVVDNGSGMCKAGFAGDDAPRAVFPS 234
E A +V+DNG+G K G+A D+ PR FPS
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPS 31
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 147 bits (357), Expect = 2e-36
Identities = 71/170 (41%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Frame = +2
Query: 287 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 463
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 464 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 619
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 620 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAXREIVRD 769
+P+ EGY + +I + LAGRD+T ++ +L +R ++ E +++
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAERIKE 242
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVFPS 234
+++DNG+G K G+AG+DAP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 90.2 bits (214), Expect = 3e-19
Identities = 46/157 (29%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Frame = +2
Query: 275 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 451
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 452 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 625
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 626 PIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 736
P+ G + R+ G + YL+K+ + SF
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVF 228
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 89.0 bits (211), Expect = 8e-19
Identities = 44/134 (32%), Positives = 69/134 (51%)
Frame = +2
Query: 329 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 508
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 509 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 688
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 689 LTDYLMKILTERGY 730
+ D L + L ++ +
Sbjct: 183 INDILAQTLRDKNF 196
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +1
Query: 142 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPS 234
+EV+A+V+D GS + GF+G+D P+ V PS
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPS 39
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 83.0 bits (196), Expect = 5e-17
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 2/165 (1%)
Frame = +2
Query: 248 PRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 421
P + GV + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 422 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 601
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 602 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 736
G + P+ +G + I + LAG L + ++ F
Sbjct: 157 GSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
Score = 35.1 bits (77), Expect = 0.013
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 142 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPS 234
EE+ +LV+D GS + G+AG+++P + PS
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS 38
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 68.1 bits (159), Expect = 2e-12
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Frame = +2
Query: 344 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 511
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 512 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 691
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 692 TDYLMKILTE 721
T +L +L E
Sbjct: 232 TQHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 49.2 bits (112), Expect = 8e-07
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 18/165 (10%)
Frame = +2
Query: 293 YVGDEAQSKRGILTLKYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 460
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 461 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG--------------IVLD 598
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 599 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 733
SG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.5 bits (83), Expect = 0.003
Identities = 28/146 (19%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Frame = +2
Query: 335 LKYPIEHGIVTNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 478
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 479 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 658
EK+ I+F + + +++ + + +G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 659 ILRLDLAGRDLTDYLMKILTERGYSF 736
++++ G D+T MK+L + +
Sbjct: 318 RIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 404 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 547
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.16
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +3
Query: 528 PCTSPSKPCSHCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 662
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 525 PPCTSPSKPCSHCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 662
PP +P P P VPP P+T P P PS P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +3
Query: 525 PPCTSPSKPCSHCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 662
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 525 PPCTSPSKPCSHCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 662
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.88
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 504 CSKHSTRPPCTSPSKPCSHCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 662
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 504 CSKHSTRPPCTSPSKPCSHCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 662
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 549 PCSHCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 653
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 507 SKHSTRPPCTSPSKPCSHCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 653
S+H + +PS +H P+ P ++ W P T PT P + + + P
Sbjct: 244 SQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMT-QPTFQPPSANVYQP 291
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 525 PPCTSPSKPCSHCTRPVVPPVSCWTPATVSPTPCPS 632
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 446 LLTEAPLNPKANREKMTQIMFETFN 520
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 460 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALTVRVRSYHRYRAGLRRR 609
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 196 NRPCTYRSHCLLPTRQLP 143
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 531 CTSPSKPCSHCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 674
C +PS+ C + PV + T S TP P+T + +PTP+ T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 569 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL-MKILTERGYSFTTT 745
SGRT + G G++ + +Y+ D+ G+ + + + G+ + TT
Sbjct: 206 SGRTVRTLFKEGRGINSSFAVYQ-----------DVTGKAQEKAIGLAVAVGSGFIYQTT 254
Query: 746 AXREIVRDIXGE 781
+E++ D+ GE
Sbjct: 255 FKKEVISDLVGE 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,389,553
Number of Sequences: 5004
Number of extensions: 76028
Number of successful extensions: 275
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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