Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_K09
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   4.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.5  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 506 IQVIQIGHAAVCFNFIWLF 450
           +Q + I HA +  +F+W++
Sbjct: 7   MQALSIRHAVILASFVWIY 25


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 584 CHPLRGTTPRYKKHDEMLSF*HKLLNIQVIQIGHAAVCFN 465
           C  L+G  P    +D  + + + LLN+  I    + V F+
Sbjct: 352 CSKLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFD 391


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 584 CHPLRGTTPRYKKHDEMLSF*HKLLNIQVIQIGHAAVCFN 465
           C  L+G  P    +D  + + + LLN+  I    + V F+
Sbjct: 442 CSKLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFD 481


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 284 HCAVNLGNGKFGVL 243
           HCA  +G G++G++
Sbjct: 595 HCAEEIGRGQYGIV 608


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 284 HCAVNLGNGKFGVL 243
           HCA  +G G++G++
Sbjct: 633 HCAEEIGRGQYGIV 646


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 618 HNNYIKIGKVNCMDNEITCKNFEVKQY 698
           H+N+IK+  VN ++  IT     VK++
Sbjct: 128 HHNFIKVCSVNDVNMTITELTDPVKEF 154


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 250 PNLPLPKLTAQCMLSFVMKMK*QVIQHYFIST 345
           P  P+P +T+ C+ S    +K     HY + T
Sbjct: 181 PEPPVPTVTSACVGSAYTPLKEDHDDHYGVPT 212


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/62 (19%), Positives = 28/62 (45%)
 Frame = +3

Query: 369 YKGTRDLPSLTLFLSEAFSVKTEGKQSKQPNEVKTYSGMSYLNDLNIEKFVSKGQHFIMF 548
           YK  R+         E    + E ++SK+P  + + S  +  N+ N   + +K  ++ + 
Sbjct: 272 YKNEREYRKYGKTSKERSRDRMERERSKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNIN 331

Query: 549 FV 554
           ++
Sbjct: 332 YI 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,675
Number of Sequences: 438
Number of extensions: 5413
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)