Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_K08
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    29   3.6  
U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocyto...    29   4.8  
U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocyto...    29   4.8  
AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.      29   4.8  
AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical ...    29   4.8  

>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 395 RV*FFNLIGVLMNMYPSATRHPAAAVRGPQPPAGPIKFTIADT 523
           +V FF+ + +++  Y  A  HPAA  R P  PA P    I  T
Sbjct: 259 KVYFFDSMHIVVEFYFDAM-HPAAGSRAPLSPAAPAALLIDTT 300


>U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform b
           protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 440 PSATRHPAAAVRGPQPPAGPIKFTIADTLERIKEEFNFLQXSI 568
           PSA  HPA +V  PQ P       I + LE   EE   L  SI
Sbjct: 387 PSALHHPAQSVSTPQLPEA-TSMEIKEALEGENEEMKQLAESI 428


>U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform a
           protein.
          Length = 751

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 440 PSATRHPAAAVRGPQPPAGPIKFTIADTLERIKEEFNFLQXSI 568
           PSA  HPA +V  PQ P       I + LE   EE   L  SI
Sbjct: 387 PSALHHPAQSVSTPQLPEA-TSMEIKEALEGENEEMKQLAESI 428


>AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 440 PSATRHPAAAVRGPQPPAGPIKFTIADTLERIKEEFNFLQXSI 568
           PSA  HPA +V  PQ P       I + LE   EE   L  SI
Sbjct: 432 PSALHHPAQSVSTPQLPEA-TSMEIKEALEGENEEMKQLAESI 473


>AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical
           protein T23C6.5 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 138 YLFNVIKLTLT*SFIHWYIVVVLKSCLCYY 227
           Y FN++KL  T +FI WY  V L   LC Y
Sbjct: 178 YGFNLLKLVATINFIVWY-AVPLVILLCIY 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,745
Number of Sequences: 27780
Number of extensions: 330693
Number of successful extensions: 599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)