Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_K04
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 49 8e-07
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 31 0.29
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 30 0.38
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 29 1.2
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 28 1.5
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 28 1.5
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 2.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.5
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 3.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.5
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 27 4.7
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 27 4.7
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 27 4.7
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 27 4.7
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 6.2
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 6.2
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 26 8.2
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 49.2 bits (112), Expect = 8e-07
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +2
Query: 323 NSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFGWRDVSNIAQEHNCLDEYDPEYQCPFLN 502
N R LPN+++ GTPG GK+TL +A+ T+ + ++ +E++ +D +++ ++
Sbjct: 3 NEERELPNIIICGTPGTGKTTLAEQVAETTELENICIGDVVKENHLHFGFDEKWKTYDVD 62
Query: 503 EDKVXXXXXXXXXXXNCI 556
EDKV CI
Sbjct: 63 EDKVLDYLEPKLLKGGCI 80
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 305 KYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLADRT-KFGWRDVSNIAQEHNCLDEYDPE 481
KY+ N V VTG G GKS L +AD KFG+ +S+ H Y
Sbjct: 368 KYRPVDNEATYCQVVTVTGEKGSGKSNLLNAVADEARKFGYFAMSSFKGHH--FSPYSAI 425
Query: 482 YQC 490
++C
Sbjct: 426 FKC 428
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 314 IKMNSGRTLPNVLVTGTPGVGKSTLCRNLADR 409
I++ S RT N ++ G PGVGK+++ LA R
Sbjct: 194 IRVLSRRTKNNPVLIGEPGVGKTSIAEGLARR 225
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 296 SFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFGWRDVSNIAQEHNCLDEYD 475
SF + + N+G L V+G PG GK+ L N+ D + V N+ NC+ +
Sbjct: 181 SFFRQHLDANAGGAL---YVSGAPGTGKTVLLHNVLDHVVSDYPKV-NVCY-INCMTINE 235
Query: 476 PE 481
P+
Sbjct: 236 PK 237
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 293 SSFTKYQIKMNSGRTLPNV-LVTGTPGVGKSTLCRNLADR 409
SS + + +P V L+TG G+G+S+L + + DR
Sbjct: 368 SSSQSLSLSQRASEVMPLVILITGCEGIGESSLIQTICDR 407
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 353 VTGTPGVGKSTLCRNLAD--RTKFGWRDVSNIAQE--HNCLDEYD 475
+ G PG GKSTLC LA +FG V I + H L+E D
Sbjct: 34 LAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMDGFHYSLEELD 78
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 329 GRTLPN-VLVTGTPGVGKSTLCRNLA 403
G LP VL+TG PG GK+ L R +A
Sbjct: 296 GGKLPRGVLLTGPPGTGKTMLARAVA 321
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 332 RTLPNVLVTGTPGVGKSTLCRNLADRT 412
+ L +L+ G+PGVGK++L LA T
Sbjct: 1557 QVLKPILLEGSPGVGKTSLITALARET 1583
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 344 NVLVTGTPGVGKSTLCRNLADR 409
NVLV G G GKSTL L +R
Sbjct: 97 NVLVLGESGSGKSTLVNTLLNR 118
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 347 VLVTGTPGVGKSTLCRNLADR 409
V V G PG GKSTL ++L R
Sbjct: 77 VAVMGPPGTGKSTLIKSLVRR 97
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 347 VLVTGTPGVGKSTLCRNLADR 409
+ V G PG GK T C LA++
Sbjct: 5 IFVLGGPGAGKGTQCDRLAEK 25
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 603 FYLKFIIIRVLTKRLFIQFRLDYRSFVDVSTL 508
F +K+III + RL +FR+ + SF +TL
Sbjct: 60 FLVKWIIIDAIYLRLLPKFRIPWLSFQPAATL 91
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 338 LPNVLVTGTPGVGKSTLCRNLADRTKFGWRDVSNIAQEHNCLDE 469
LP++L G+PG GK++ L+ R FG + + + E N DE
Sbjct: 52 LPHMLFYGSPGTGKTSTILALS-RELFGPQLMKSRVLELNASDE 94
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +2
Query: 287 FSSSFTKYQIKMNSGRTLPNVLVTGTPGVGKST----LCRNL 400
F+ S ++ + K+ S + +LVTG G+GK++ +CR L
Sbjct: 408 FNPSVSRKKAKLTSSQFSNWMLVTGVTGIGKTSCLYAICREL 449
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 755 CYVSICSSLFYYIVNTI 705
CY S CS +FYY T+
Sbjct: 769 CYFSYCSLIFYYQATTL 785
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 335 TLPNVLVTGTPGVGKSTLCRNLADR 409
T +L+TG GKSTLC L +
Sbjct: 153 TSSKILITGDLNAGKSTLCNALVHK 177
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 8.2
Identities = 7/16 (43%), Positives = 15/16 (93%)
Frame = +2
Query: 338 LPNVLVTGTPGVGKST 385
+P+++++G PG+GK+T
Sbjct: 54 MPHLVISGMPGIGKTT 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,337
Number of Sequences: 5004
Number of extensions: 67594
Number of successful extensions: 226
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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