Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_K04
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47075-3|CAA87383.2|  182|Caenorhabditis elegans Hypothetical pr...    62   7e-10
Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical pr...    32   0.62 
U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical pr...    31   0.83 
L23648-10|AAK95878.2|  368|Caenorhabditis elegans Hypothetical p...    31   1.4  
Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal m...    30   2.5  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    28   7.7  

>Z47075-3|CAA87383.2|  182|Caenorhabditis elegans Hypothetical
           protein E02H1.6 protein.
          Length = 182

 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 27/61 (44%), Positives = 42/61 (68%)
 Frame = +2

Query: 332 RTLPNVLVTGTPGVGKSTLCRNLADRTKFGWRDVSNIAQEHNCLDEYDPEYQCPFLNEDK 511
           R  PN+LVTG+PG GKSTL + +A++  F + +VS   +E+N   ++D +Y C  L+EDK
Sbjct: 7   RRRPNILVTGSPGTGKSTLGQQVAEKLGFVFIEVSKEVRENNLQGDFDEQYNCHVLDEDK 66

Query: 512 V 514
           +
Sbjct: 67  L 67


>Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical
           protein F10B5.5 protein.
          Length = 424

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 347 VLVTGTPGVGKSTLCRNLADRTKFGWRD 430
           +L+TG PG GK++LC+ LA        D
Sbjct: 175 ILLTGPPGTGKTSLCKGLAQHLSIRMND 202


>U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical
           protein B0207.6 protein.
          Length = 268

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 347 VLVTGTPGVGKSTLCRNLAD 406
           VLV G PG GKST C  L D
Sbjct: 4   VLVIGAPGAGKSTFCAGLTD 23


>L23648-10|AAK95878.2|  368|Caenorhabditis elegans Hypothetical
           protein F44B9.8 protein.
          Length = 368

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 317 KMNSGRTLPNVLVTGTPGVGKSTLCRNLADRTKFGWRDVSNIAQEHNCLDE 469
           K    RTLP++L  G PG GK+T     A R  +    ++++  E N  DE
Sbjct: 55  KFIENRTLPHLLFYGPPGTGKTTTVL-AAARQMYSPTKMASMVLELNASDE 104


>Z82285-6|CAB05299.1|  252|Caenorhabditis elegans Hypothetical
           protein T28F3.6 protein.
          Length = 252

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 320 MNSGRTLPNVLVTGTPGVGKSTLCRNLAD 406
           M   + +  +LV G P  GK+TLC  LAD
Sbjct: 22  MQEDKKVAKILVLGPPKAGKTTLCTFLAD 50


>AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform b protein.
          Length = 626

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 287 FSSSFTKYQIKMNSGRTLPNVLVTGTPGVGKSTLCRNLAD 406
           F S +T     +   +TL   L+TG  G+GK++L R +AD
Sbjct: 421 FQSGYTDLTFHLPRNKTL---LITGDSGIGKTSLMRVIAD 457


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 598 VKLNFPYDFEHWINYIVNKKNVWQISSLTKSSLCY 702
           +K +FPYDF +  NYI N      +  + K  +C+
Sbjct: 131 LKYHFPYDFLYSQNYISNYVRKLNVFFVLKDFICF 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,723,030
Number of Sequences: 27780
Number of extensions: 360746
Number of successful extensions: 981
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)