Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_K01
(1102 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 67 5e-12
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 67 5e-12
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 67 5e-12
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 36 0.013
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.040
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 33 0.054
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.12
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.50
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 0.62
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 6.1
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 66.9 bits (156), Expect = 5e-12
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 194 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYA 289
HLIYKCGGIDKRTIEKFEKEA E+GKGSF YA
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEATELGKGSFKYA 57
Score = 34.3 bits (75), Expect = 0.031
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1
Query: 118 MGKEKTHINIVVIGHV 165
MGKEK HIN+VVIGHV
Sbjct: 1 MGKEKGHINVVVIGHV 16
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 66.9 bits (156), Expect = 5e-12
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 194 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYA 289
HLIYKCGGIDKRTIEKFEKEA E+GKGSF YA
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEATELGKGSFKYA 57
Score = 34.3 bits (75), Expect = 0.031
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1
Query: 118 MGKEKTHINIVVIGHV 165
MGKEK HIN+VVIGHV
Sbjct: 1 MGKEKGHINVVVIGHV 16
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 66.9 bits (156), Expect = 5e-12
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 194 HLIYKCGGIDKRTIEKFEKEAQEMGKGSFXYA 289
HLIYKCGGIDKRTIEKFEKEA E+GKGSF YA
Sbjct: 26 HLIYKCGGIDKRTIEKFEKEATELGKGSFKYA 57
Score = 34.3 bits (75), Expect = 0.031
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +1
Query: 118 MGKEKTHINIVVIGHV 165
MGKEK HIN+VVIGHV
Sbjct: 1 MGKEKGHINVVVIGHV 16
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 35.5 bits (78), Expect = 0.013
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +2
Query: 194 HLIYKCGGIDKRTIEKFEKEAQEMGKGSF 280
++++ G +DKRT+EK E+EA+E GK S+
Sbjct: 257 NILFLTGMVDKRTMEKIEREAKEAGKESW 285
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.040
Identities = 29/133 (21%), Positives = 36/133 (27%), Gaps = 2/133 (1%)
Frame = +3
Query: 588 PTXRPXPPPXXPSXXXXXXXXXXXXXXSXSPPXXPXXXXXXPXXARPPPXPTXXXXRXXX 767
P R PPP P S + P P + P P R
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTST 414
Query: 768 PPXPXX--LAXXFPXXXPGXXPSXLLXXXXXSPLHSXXSPPXXPPXSRYXXVXXXPXXXX 941
PP P L P P P L +P +P P + P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 942 SPXPXXXPRPXSP 980
+P P P P +P
Sbjct: 475 APPPAPAPAPAAP 487
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 33.5 bits (73), Expect = 0.054
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 197 LIYKCGGIDKRTIEKFEKEAQEMGKGSFXYA 289
++++ G I+ R+++K EA GKGSF YA
Sbjct: 197 IMFELGEINSRSMQKLHNEAANSGKGSFSYA 227
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.12
Identities = 52/263 (19%), Positives = 65/263 (24%), Gaps = 14/263 (5%)
Frame = +1
Query: 349 PPSIXXLLXSSKLXKXPXXX----HPLXXPXXTPXFSFXXPFXSXVXPXLPXXDXFXXLX 516
PPSI L S + P HP P P + + V P +
Sbjct: 966 PPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVP 1025
Query: 517 XPSPXXXXXXLPXXPXPXXLAXXPPP------XAPXHPPXXPPPPXXXXXXXXXXXXPLL 678
PS +P P + PP AP PP P P P +
Sbjct: 1026 LPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
Query: 679 XXXSXXXXXXXPXXPXPPXXPXXXXXXXXPPHXXXVLPSXSPXXXLGXXLLXXSXLEXXP 858
S P PP P P P P +
Sbjct: 1086 PAPSGIPPVPKPSVAAPP-VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144
Query: 859 PXI--PPLPXPXXLPXPATXSSXXPXXXXPXR--XXXAXPAXPLPXXXXXXSSXXXXXXX 1026
P + PP+P P P S P P PA +P +
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204
Query: 1027 XXPXPXTPPXVSPXXXXXSVXXP 1095
P PP +P S P
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLP 1227
Score = 31.9 bits (69), Expect = 0.16
Identities = 35/175 (20%), Positives = 44/175 (25%), Gaps = 4/175 (2%)
Frame = +1
Query: 457 PFXSXVXPXLPXXDXFXXLXXPS--PXXXXXXLPXXPXPXXLAXXPPPXAPXHPPXXPPP 630
P S P +P + PS P + P P PP AP P P P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
Query: 631 PXXXXXXXXXXXXPLLXXXSXXXXXXXPXXPXPPXXPXXXXXXXXPPHXXXVLPSXSPXX 810
P + S PP P + P P
Sbjct: 1127 SVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA 1186
Query: 811 XLGXXLLXXSXLEXXPPXI--PPLPXPXXLPXPATXSSXXPXXXXPXRXXXAXPA 969
+ P + PP+P P P T S+ P P PA
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA 1241
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.50
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 559 PXPXXLAXXPPPXA---PXHPPXXPPPP 633
P P ++ PPP A P PP PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect(2) = 0.62
Identities = 17/77 (22%), Positives = 21/77 (27%)
Frame = +1
Query: 712 PXXPXPPXXPXXXXXXXXPPHXXXVLPSXSPXXXLGXXLLXXSXLEXXPPXIPPLPXPXX 891
P P P PP + P P + S PP P +P P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206
Query: 892 LPXPATXSSXXPXXXXP 942
P +S P P
Sbjct: 207 SQAPVANTSSRPSSFAP 223
Score = 23.4 bits (48), Expect(2) = 0.62
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +1
Query: 550 PXXPXPXXLAXXPPPXAPXHPPXXPPPP 633
P P P PP AP P PP P
Sbjct: 128 PAPPTPQS-ELRPPTSAPPRPSIPPPSP 154
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 511 LXXPSPXXXXXXLPXXPXPXXLAXXPPPXAPXHPPXXPPPP 633
L P P +P P P + PP PP PPPP
Sbjct: 729 LKSPPPPPPAVIVPT-PAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Frame = +1
Query: 520 PSPXXXXXXLPXXPXPXXLAXXPPPXAPX----HPPXXPPPP 633
P+P +P P P PPP P PP PPPP
Sbjct: 742 PTPAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 8.1
Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = +1
Query: 784 VLPSXSPXXXLGXXLLXXSXLEXXPPXI--PPLPXPXXLPXPATXSSXXPXXXXPXRXXX 957
+LP S LL S P I P P P +P PA P P
Sbjct: 713 LLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Query: 958 AXPAXPLP 981
A P P P
Sbjct: 773 AGPPPPPP 780
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 586 PPPXAPXHPPXXPPPP 633
PPP PP PPPP
Sbjct: 12 PPPPPGFEPPSQPPPP 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,699
Number of Sequences: 5004
Number of extensions: 32404
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 581717144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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