Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_J22
(953 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.019
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.73
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.97
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.9
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 9.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.019
Identities = 37/152 (24%), Positives = 37/152 (24%)
Frame = -2
Query: 685 PPPGGXGAXGEXPXAXXPXXXXXAPGXPPGXRXPPXXXXXXXXXXXXPXXGGXXXPPQGE 506
PPP A G P P AP PP P PP
Sbjct: 340 PPPPRSNAAGSIPL---PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 505 GXGXPKXXPXXXGGAXXXXXXXXXXXXXXXXXXXXPXPPPGXXXXXRNPKGXPKXPXPPX 326
G P P G A PP P G P P P
Sbjct: 397 GRSAPALPPL--GNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL---PMGAPAAPPLPP 451
Query: 325 XGPKXXXXPPXXPGGPPXPPHFXXGXAPXXPP 230
P P P PP PP AP PP
Sbjct: 452 SAPIAPPLPAGMPAAPPLPP-----AAPAPPP 478
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = -3
Query: 345 KXQXPPKXAQKXPXPPPXXRGGPHXPPIFXXGGPPXP---PXLRGXGXPXP 202
K PP A P P P P PP GGPP P P + G G P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPI--PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 30.3 bits (65), Expect = 0.42
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = -2
Query: 394 PPPGXXXXXRNPKGXPKXPXPP-XXGPKXXXXPPXXPG-GPPXPP 266
PPP P P P P GP PP G GPP PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 29.1 bits (62), Expect = 0.97
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Frame = -2
Query: 367 RNPKGXPKXPXPPXXGPKXXXXPPXXP--GGPPXPPH--FXXGXAPXXPP 230
++P P P P PP P GGPP PP G P PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.73
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 301 PPXXPGGPPXPPHFXXGXAPXXPPXKG 221
PP P PP PP F P PP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.97
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = -2
Query: 349 PKXPXPPXXGPKXXXXPPXXPGGPP--XPPHFXXGXAPXXP 233
P P PP P PP P GPP PP AP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPP-MPAGPPSAPPPPLPASSAPSVP 1744
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -3
Query: 333 PPKXAQKXPXPPPXXRGGPHXPPIFXXGGPPXPP 232
PP+ + P PPP P P G P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/74 (28%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Frame = -2
Query: 391 PPGXXXXXRNPKGXPKXPXPPXXGPKXXXXPPXXP--GGPPXPPHFXXGXAPXXPPXKGX 218
PP P P PP P P P G PP PP AP P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP---PSEAPPVPKPSVG 1206
Query: 217 RXPXTPXFXGXPXP 176
P P P P
Sbjct: 1207 VPPVPPPSTAPPVP 1220
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/73 (27%), Positives = 20/73 (27%)
Frame = -2
Query: 394 PPPGXXXXXRNPKGXPKXPXPPXXGPKXXXXPPXXPGGPPXPPHFXXGXAPXXPPXKGXR 215
PP P P PP P P P P P G P PP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Query: 214 XPXTPXFXGXPXP 176
P TP P P
Sbjct: 1219 VP-TPSAGLPPVP 1230
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/45 (28%), Positives = 14/45 (31%)
Frame = -1
Query: 401 PXPTPXXRXPXPEPKGGXKKXXXPXNXPKKXXXPPXXPGGAPIXP 267
P P P P P+ G P P P GAP P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Frame = -2
Query: 394 PPPGXXXXXRNPKGXPKXPXP-----PXXGPKXXXXPPXXPGGPPXPPHFXXGXAPXXPP 230
P P P G P P P P P P P G P P AP P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPK-PSVAAPPVPV 1135
Query: 229 XKGXRXPXTPXFXGXPXP 176
G P P P
Sbjct: 1136 PSGAPPVPKPSVAAPPVP 1153
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/64 (26%), Positives = 17/64 (26%)
Frame = -2
Query: 391 PPGXXXXXRNPKGXPKXPXPPXXGPKXXXXPPXXPGGPPXPPHFXXGXAPXXPPXKGXRX 212
PP R P P P P P PP PP P P P
Sbjct: 130 PPTPQSELRPPTSAP--PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 211 PXTP 200
P P
Sbjct: 188 PSLP 191
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = -3
Query: 327 KXAQKXPXPPPXXRGGPHXPPIFXXGGPPXPPXLRGXGXPXP 202
K + P P P GGP P F GP ++ P P
Sbjct: 234 KSQENKPKPTPFGSGGPSKPTPFESHGPAKQISVQPSEHPKP 275
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Frame = -2
Query: 715 RGGGXX---WVKXPPPGGXGA 662
RGGG W K PPP G G+
Sbjct: 74 RGGGVLRVEWAKQPPPSGPGS 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,835
Number of Sequences: 5004
Number of extensions: 24596
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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