Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J21
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    29   0.67 
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    29   1.2  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.6  

>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 201 PDSSTHPLDTIRSCSFTSRAPAKKSIQINKLITQSNI 91
           PDSS H +   R+ S    AP +KSI I+  I Q+N+
Sbjct: 225 PDSSFHSVACYRASSHYKEAPVEKSIDID--IIQNNL 259


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -2

Query: 265 SQHLPSPRQSASSSHLVSQTLTGLVHSSVG 176
           ++H+PSPR++A+     SQ+  G ++SS+G
Sbjct: 446 TRHIPSPRENAARK--ASQSYIGPINSSIG 473


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 520 SDTISSVPSDSTRVRPSLPSIVISPFLQVILGGGFPWNIQR 398
           SD + S+P  ++ + PSLP IV+      ++ G F WN  R
Sbjct: 819 SDLVFSIPGITSWLDPSLPVIVLIANYLGLMDGPF-WNTIR 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,960
Number of Sequences: 5004
Number of extensions: 53652
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)