Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_J21
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 32 0.53
01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912 32 0.70
12_01_0803 + 7371349-7372146,7372301-7372675 31 1.2
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 31 1.2
03_02_0899 + 12257831-12257858,12258490-12258561,12259121-122604... 30 2.1
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110 30 2.8
03_02_0517 + 9054816-9055655 30 2.8
05_01_0106 + 702504-702687,702856-703037,703070-703933 29 3.8
06_01_0874 - 6702059-6702733,6703146-6703521,6703677-6703770,670... 29 5.0
09_01_0044 + 796237-796327,797025-797079,798129-798639 29 6.6
05_01_0533 + 4594169-4595065,4598375-4598983 29 6.6
04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108 29 6.6
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 32.3 bits (70), Expect = 0.53
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 210 CETKCDDDADCRGDGKCCER--GCSRLC 287
C+ C D C +G CCE+ GCS+ C
Sbjct: 456 CQQMCGKDCACVENGTCCEKYCGCSKSC 483
>01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912
Length = 487
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -1
Query: 560 LSDADVDAGVVPVQRHDLQRAVRQHARPA 474
L++A ++AG+ P + +L RAV HARPA
Sbjct: 255 LAEAALEAGLRPAEFEELARAVPAHARPA 283
>12_01_0803 + 7371349-7372146,7372301-7372675
Length = 390
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 441 RKGEITIDGSEGRTRVLSDGTLEIVSLYRNDTGVYICIAENEFGHQPAGDPPASERAGVD 620
R ++ ++ + ++L+D L++VS + Y + + F H A DP + + G+D
Sbjct: 308 RSSDVLMEDTGAEPQLLTDADLDLVS--GRERQAYRMLKDRVFAHTRAYDPEMARKIGMD 365
Query: 621 KD 626
D
Sbjct: 366 VD 367
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 31.1 bits (67), Expect = 1.2
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 210 CETKCDDDADCRGDGKCCER--GCSRLC 287
C++ C C +G CCE+ GC ++C
Sbjct: 653 CQSACGKQCPCLTNGTCCEKYCGCPKMC 680
>03_02_0899 +
12257831-12257858,12258490-12258561,12259121-12260413,
12260593-12261224
Length = 674
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = -2
Query: 625 SLSTPARSLAGGSPAG*CPNSFSAMQM*TPVSFRYSDTISSVPSDSTRVRPSLPSIVI 452
+L PA L G P PN+ + +S R + I S+PSD T + PSL SI +
Sbjct: 111 ALRVPAAGLIGAIP----PNTLGRLVSLQVLSLRSNRLIGSIPSDITSL-PSLQSIFL 163
>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
Length = 530
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 450 EITIDGSEGRTRVLSDGTLEIVSLYRNDTG 539
E+ IDG EG T L+D L+ + +Y N G
Sbjct: 280 ELAIDGVEGSTFRLADTRLQTLRMYENQVG 309
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 411 HGNPPPKITWRKGEITIDGSEGRTR 485
+G P ++TW +G+ +DG EGR R
Sbjct: 229 NGVGPRRVTWPEGDGHVDGGEGRIR 253
>05_01_0106 + 702504-702687,702856-703037,703070-703933
Length = 409
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -2
Query: 286 HRRLHPRSQHLPSPR--QSASSSHLVSQTLTGLVHSSVGHDPLLFIHFSRSRQKVHPNK* 113
H++ PR Q L +PR ++ASSSH + + + +GHDP F H + + PN+
Sbjct: 263 HKQYKPRLQ-LGAPRAPRAASSSHPGASS-SSAPPPPLGHDPNAFFHPQYAYFGMQPNEY 320
Query: 112 IN 107
N
Sbjct: 321 FN 322
>06_01_0874 -
6702059-6702733,6703146-6703521,6703677-6703770,
6705455-6705833
Length = 507
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 541 TPVSFRYSDTISSVPSDS-TRVRPSLPSIVISPFLQVILG 425
+PV F DT+ + PS+S T R SL + +S ++LG
Sbjct: 276 SPVLFEIQDTVRTPPSESKTMKRASLYGLAMSAVFYLVLG 315
>09_01_0044 + 796237-796327,797025-797079,798129-798639
Length = 218
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 514 CRCTGTTPASTSASLRTSSGISQQEIHLQVNAPVSTRILSAPPXADRGRRTXSALRSGWV 693
CR T TTP++ +A++ +S + +Q + P S+ + G +A S
Sbjct: 87 CRVTATTPSADAAAVAAASSLCRQSLCCVPPPPASSHPTTRSGRGKEGEGRVTATTSSAA 146
Query: 694 P 696
P
Sbjct: 147 P 147
>05_01_0533 + 4594169-4595065,4598375-4598983
Length = 501
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 560 LSDADVDAGVVPVQRHDLQRAVRQHARPA 474
L++A ++AG+ P + +L RAV HAR A
Sbjct: 258 LAEAALEAGLRPAEFEELARAVPAHARAA 286
>04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108
Length = 510
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = -1
Query: 614 TGAFTCRWISCWLMPELVLSDAD-VDAGVVPVQRHDLQRAVRQHARPALAAVDSDFSFPP 438
T A + RW W LVL DAD + AGV A R+ AR AV + P
Sbjct: 78 TAALSSRWRDAWRSTPLVLVDADLLPAGVSDADTD----AAREEARAVTFAVSRVIAAHP 133
Query: 437 SDLGR 423
R
Sbjct: 134 GPFRR 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,225,356
Number of Sequences: 37544
Number of extensions: 437703
Number of successful extensions: 1548
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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