Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J18
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    29   0.87 
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    28   1.5  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   3.5  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   6.1  
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe...    26   6.1  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   8.1  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   8.1  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 23/120 (19%), Positives = 45/120 (37%)
 Frame = +2

Query: 377 NIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGGAPMKGGIFL 556
           N+ GV+   +  T +F+ S +          G        ++A   L      +   +  
Sbjct: 431 NLIGVFFHAYPATGSFSRSAINAKSGVRTPLGGIFTAGVVVLALYCLTGAFYYIPNAVLS 490

Query: 557 SVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNGSTGQLSFITCFLLF 736
           +V    V  L+  +  T + W MQ +   I + A  + + ++ +NG    +      LLF
Sbjct: 491 AVIIHSVFDLIIPWRQTLLFWRMQPLEALIFICAVFVSVFSSIENGIYTAVCLSAALLLF 550


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 111 IFNTCVRIYFYLFLLKHARSFRQILRIPY 25
           IF  CV  Y   F+LKHA+ +R I  I Y
Sbjct: 217 IFFGCVIGYLLSFILKHAQKYRLIDAISY 245


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 554 LSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNGSTGQLSFIT 721
           L VY  I++      +  + ++++   T P  ++    +I  NYK+GS   L FIT
Sbjct: 736 LDVYLKILNDWEGALSYCNSVYSIDGETEPYYMLLA--EISKNYKSGSLNILDFIT 789


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -1

Query: 424 KVRSDSKQLQINSINIDSFGTLTL*NFENLWHFYQYGP*NDADSETFAECGFETWY 257
           +V S +  L + + NI   GTLT  +  ++W+ +     N  +        +  WY
Sbjct: 4   RVVSPNPMLSLETENIAKMGTLTADSLGSMWNVFTKCAENLENGRRLENISWRLWY 59


>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 482 AIQTAMIAALVLHYGGAPMKGGIFLSVYCAIVSVL--VSGYTSTDILWTMQAVTVPIILI 655
           A+Q+  IAAL+   G   +KG  F+ +Y    S L  V  Y  T+   T   +   I  +
Sbjct: 71  AVQSYSIAALLQLTGTVTLKGAFFVGLYVFGASGLPDVVDYMFTESRGTPYILVKTISSL 130

Query: 656 AKSI 667
            KS+
Sbjct: 131 VKSV 134


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
 Frame = +2

Query: 353 QSKSAEGI-NIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHY-- 523
           Q   A G+ N+ G++   +  T +F+ S +      A  +     I TA +  L L+   
Sbjct: 408 QELIAMGVTNLIGIFFNAYPATGSFSRSAIKA---KAGVKTPIAGIFTAAVVILSLYCLT 464

Query: 524 -GGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNG 694
                +   I  +V    V+ L+     T + W +Q +   I  I+  + + ++ +NG
Sbjct: 465 DAFYYIPNAILSAVIIHAVTDLILPMKQTILFWRLQPLEACIFFISVIVSVFSSIENG 522


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 682 LQKWQHWSTVVYNLLPVVWR*CSKNLHINSRNWRLHYYXDLL 807
           ++    W   +   LP+V + CS+ +    R W   Y  DL+
Sbjct: 191 MEDLHEWLFSIRQKLPLVGKSCSQQIDEARRRWAREYKEDLV 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,728,524
Number of Sequences: 5004
Number of extensions: 82628
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)