Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J16
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...   120   4e-28
SPBC30D10.04 |swi3||replication fork protection complex subunit ...    30   0.51 
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    26   6.3  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   6.3  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    26   8.3  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score =  120 bits (288), Expect = 4e-28
 Identities = 64/154 (41%), Positives = 91/154 (59%), Gaps = 14/154 (9%)
 Frame = +1

Query: 220 YTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDD 399
           Y G + EQ+T F+  +KKLM+  KF      +VDM KV ++VLKPWI  ++ E++  ED+
Sbjct: 5   YKGVAAEQETLFTTADKKLMRSTKFPASYDTKVDMKKVNIEVLKPWIATRLNELIGFEDE 64

Query: 400 VVIEYVTNQLEEKFPC-------------PKKMQINLTGFLNGKNARLFMGELWELLLSA 540
           VVI +V   LEE                 P+K+Q+NLTGFL   NA  F  ELW L++SA
Sbjct: 65  VVINFVYGMLEEAVEASKTSDSQNESTLDPRKVQLNLTGFLE-SNATAFTEELWSLIISA 123

Query: 541 QASENGIPESFTQQKKEEIKKRMEE-QQNKDKDK 639
             ++ GIPE F  +KKEEI K  +  + +K++ K
Sbjct: 124 SQNQYGIPEKFILEKKEEISKLKDRTEASKEESK 157


>SPBC30D10.04 |swi3||replication fork protection complex subunit
           Swi3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 532 LSAQASENGIPESFTQQKKEEIKKRMEEQQ 621
           +S  AS++G+ +   + K+EE+KK  EE++
Sbjct: 1   MSTAASDSGVEKLVEENKREEVKKNEEEKE 30


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3

Query: 112 VTHKYKINQLR 80
           +THKYK+NQLR
Sbjct: 278 ITHKYKLNQLR 288


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +1

Query: 427 LEEKFPCPKKMQINLTGFLNGKNARLFMGEL----WELLLSAQASENGIPESFTQQKKEE 594
           + E FP  +  + N++   N  + R  + E+    WE L     S+  I +   ++KK  
Sbjct: 386 IPEMFPTFRVYEYNISDIANQLDDREELTEITSFNWETLEEQSQSDYEIDKKKKKKKKNN 445

Query: 595 IKKRMEEQQN 624
            KK+  +++N
Sbjct: 446 KKKKKNKRKN 455


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 523 ELLLSAQASENGIPESFTQQKKEEIKKRMEEQQNKDKDKE 642
           +L L  ++ E  + +   ++KK   KK  ++++ K+K+KE
Sbjct: 270 KLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,659
Number of Sequences: 5004
Number of extensions: 58169
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)