Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J16
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900...   141   8e-34
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    39   0.006
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297...    33   0.23 
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    32   0.71 
11_01_0551 + 4361640-4363386,4363443-4363687                           29   5.0  
01_05_0488 - 22647196-22647561,22647847-22647999,22648716-226496...    29   5.0  
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508...    28   8.7  

>03_02_0509 -
           9003330-9003446,9003587-9003673,9004113-9004280,
           9004835-9004957,9005081-9005170,9005275-9005295
          Length = 201

 Score =  141 bits (341), Expect = 8e-34
 Identities = 67/133 (50%), Positives = 93/133 (69%)
 Frame = +1

Query: 220 YTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDD 399
           + GTS +QDTRFS+K+ KL+K  KF   L   VDM+KVK+DV+KPWI  ++TE+L  ED+
Sbjct: 6   FRGTSADQDTRFSNKQAKLLKTQKFAPELEHLVDMTKVKMDVMKPWIATRVTELLGFEDE 65

Query: 400 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWELLLSAQASENGIPESFTQ 579
           V+I ++   LEEK    KK+QI LTGF+  KN   FM ELW LLLSAQ + +G+P+ F  
Sbjct: 66  VLINFIYGLLEEKEADGKKIQIQLTGFME-KNTVKFMKELWSLLLSAQQNASGVPQQFLD 124

Query: 580 QKKEEIKKRMEEQ 618
            K+ EI+++  E+
Sbjct: 125 AKEAEIQQKKAEE 137


>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
            19906845-19907422,19907506-19908180,19908263-19908653,
            19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 16/63 (25%), Positives = 37/63 (58%)
 Frame = +1

Query: 346  LKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWE 525
            ++PWI +KI E L  E+  +++Y+ +  ++     K +++ L   L+   A +F+ ++W 
Sbjct: 843  MRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQASKMLEL-LQSILD-VEAEMFVLKMWR 900

Query: 526  LLL 534
            +L+
Sbjct: 901  MLI 903


>10_08_0105 -
           14828097-14828226,14828371-14828547,14829690-14829739,
           14829841-14829909,14829976-14830074,14830148-14830226,
           14830587-14830687,14830794-14830862,14831019-14831059,
           14831313-14831663,14831676-14832511,14832674-14832777,
           14833587-14834003,14836108-14836491
          Length = 968

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
 Frame = +1

Query: 295 GDCLTQQVDMSK-VKLDVLKPWITQKITEIL-NMEDDVVI---EYVTNQLEEKFPCPKKM 459
           G  +   V +SK    ++ KP +  ++ E+  N+E+D      E+V N+L   F     +
Sbjct: 313 GTLIPADVFISKGTPFNLTKPLVQNQVVELASNIENDPSAAHSEHVGNRLH-MFGNGNSL 371

Query: 460 QINLTGFLNGKNARLFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMEEQQNKDKDK 639
             N +G      A   + +LW L    Q+ +          +KE++K   + Q+N++  K
Sbjct: 372 SENQSGCEKTMIAGSEVSQLWTLAPQMQSDQQSTSAGAHSMQKEDLKLTPDSQENEESKK 431

Query: 640 E 642
           +
Sbjct: 432 Q 432


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +1

Query: 181 EEVLISPXSKMMMYTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWI 360
           E++   P  ++++   + +++ T     +KKLMK+ +     T Q D+S  KL   KP  
Sbjct: 316 EQICNEPCEEVVLKRSSKSKRKT-----DKKLMKKQQHSKKRTAQADVSDAKLCRRKPKK 370

Query: 361 TQKITEILN 387
            + ++EI+N
Sbjct: 371 VRLLSEIIN 379


>11_01_0551 + 4361640-4363386,4363443-4363687
          Length = 663

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 529 LLSAQASENGIPESFTQQKKEEIKKRMEEQQNKDKDKE 642
           LL+ +A++NG   SFT Q  E IK++ +  + K K K+
Sbjct: 282 LLTERAAQNG---SFTTQAAESIKEKKKRAEKKKKKKK 316


>01_05_0488 -
           22647196-22647561,22647847-22647999,22648716-22649663,
           22649783-22649830
          Length = 504

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 662 GRVPGAALATDGAPELVLVIV 724
           GR  GAALA DGAPEL  ++V
Sbjct: 231 GRGEGAALAIDGAPELRELVV 251


>03_02_0025 +
           5084003-5084303,5084449-5084639,5084793-5084873,
           5084972-5085319,5085409-5086293
          Length = 601

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +1

Query: 565 ESFTQQKKEEIKKRMEEQQNKDKDKE 642
           E   Q++KEE K+R EE+Q +++++E
Sbjct: 521 EERRQREKEEKKRREEEEQRREEEEE 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,979,561
Number of Sequences: 37544
Number of extensions: 379810
Number of successful extensions: 1282
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)