Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J14
         (1066 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    30   3.6  
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633...    29   4.7  

>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 399 TXPTRXGXNPEXTXGKKGESPXXXPXXRRAXXXPPPPR 512
           T   R   NP+ +  K+   P   P  RR    PPPPR
Sbjct: 20  TPNPRAPPNPKSSASKEEPLPSATPTTRRRRGPPPPPR 57


>04_04_1699 +
           35462160-35462555,35463114-35463196,35463317-35463378,
           35463745-35463806,35463932-35463991,35464079-35464111,
           35464196-35464261,35464349-35464393
          Length = 268

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 471 PXXRRAXXXPPPPRRXEXXGPTQRXKEA 554
           P  +R    PPPPRR    GP  R +++
Sbjct: 52  PPRKRGHPPPPPPRRTRTRGPPARPQQS 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.128    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,130
Number of Sequences: 37544
Number of extensions: 219651
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3164520116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)