Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J13
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511...    32   0.54 
02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.9  
01_03_0005 + 11568545-11569119,11569179-11569191                       29   3.8  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   5.0  
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535...    29   6.7  
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    28   8.8  

>09_06_0374 +
           22649455-22650024,22650085-22650637,22650812-22651147,
           22651171-22652605,22652939-22653062
          Length = 1005

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 22/63 (34%), Positives = 25/63 (39%)
 Frame = +2

Query: 668 LRPPXRASQKSTLXXXGGEXRXGYKGXXAFPPXNPPGXAXLXPXLPXYRKPXPPFXPSGK 847
           LRP  R  Q+ +     GE      G    PP  PPG A   P  P  R+P  P  P   
Sbjct: 390 LRPRIRRPQRPSGGNLTGERPRIAYGKPRRPPRRPPGLA--RPRKPLGRRPPGPARPGKP 447

Query: 848 RGR 856
            GR
Sbjct: 448 LGR 450


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 758 PPXNPPGXAXLXPXLPXYRKPXPPFXPSGKRG 853
           PP  PP      P  P    P PP  P GK+G
Sbjct: 344 PPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG 375


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 716 GGEXRXGYKGXXAFPPXNPPGXAXLXPXLPXYR-KPXPPFXPSG 844
           GG  + G  G  A+P   PP      P  P Y   P PPF  SG
Sbjct: 124 GGGWQQGGGGGGAYPTPPPPNP--FLPYFPFYYYSPPPPFYSSG 165


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 480 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPXTV 635
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>06_01_0728 -
           5356400-5356676,5356888-5357090,5357181-5357474,
           5357940-5358063,5358157-5359496
          Length = 745

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +2

Query: 752 AFPPXNPPGXAXLXPXLPXYRKPXPPFXPSGKRGRFSXT 868
           A PP NP   A   P  P  R P PP   +  R R S T
Sbjct: 52  AKPPQNPEKTAASSPHAPSSRPPLPPASAALLRRRSSLT 90


>01_06_1670 -
           39007402-39008229,39008320-39008567,39009159-39009364,
           39009454-39011054
          Length = 960

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +2

Query: 743 GXXAFPPXNPPGXAXLXPXLPXYRKPXPPFXPS 841
           G    PP  PP    L P  P  RKP  P  PS
Sbjct: 352 GQPPAPPPPPPFAPTLPPPPPPRRKPPSPSPPS 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,357,109
Number of Sequences: 37544
Number of extensions: 306198
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)