Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J13
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z69386-1|CAA93430.1|  241|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   6.0  
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = -1

Query: 855 RPRFPEGXKGGXGXR*XGRXGNRXAXPGGFXGG 757
           RP F  G  GG G R  GR G+R    GGF GG
Sbjct: 3   RPEFNRGG-GGGGFR-GGRGGDRGGSRGGFGGG 33


>Z69386-1|CAA93430.1|  241|Caenorhabditis elegans Hypothetical
           protein ZK596.1 protein.
          Length = 241

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 846 FPEGXKGGXGXR*XGRXGNRXAXPGGFXGGN 754
           FP G +GG G    G  GN+   P G  GGN
Sbjct: 176 FPGGNQGGFGGNQGGFGGNQGGFPFGNQGGN 206


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
           protein F55F10.1 protein.
          Length = 4368

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 606 QKASKRPXTVKRPRCWRFSIGSAPLXEHPKN 698
           +   K+  TVK    +RF +G  P+ +HP+N
Sbjct: 672 ESEEKKVMTVKIQAAFRFKVGVMPVPKHPEN 702


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +2

Query: 758 PPXNPPGXAXLXPXLPXYRKPXPP--FXPSGKRG 853
           PP  PPG     P +P    P PP  F P G  G
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 332


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +2

Query: 758 PPXNPPGXAXLXPXLPXYRKPXPP--FXPSGKRG 853
           PP  PPG     P +P    P PP  F P G  G
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 342


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 855 RPRFPEGXKGGXGXR*XGRXGNRXAXPGGFXGGN 754
           R  F  G  GG G R   R G R    GGF GG+
Sbjct: 331 RGGFDGGRGGGGGFRGGDRGGFRGGDRGGFRGGD 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,891
Number of Sequences: 27780
Number of extensions: 229412
Number of successful extensions: 452
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)