Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J12
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    28   1.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   3.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   4.7  

>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 176 WRAAGADGERGHREYERYHPMPHNWFYKKSKQVNVRRASQ 57
           WR  G     G   YE + P PH   +K+ K   ++ + Q
Sbjct: 71  WRGLGITQSLGWEMYEVHVPEPHILLFKREKDYQMKFSQQ 110


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
 Frame = -1

Query: 602 YTPHSTK*APTTFPEVCLKGLFFSPIE*SRGLKWLPSVSATTISTPSLELHPSELQSSTC 423
           YTP ST+ +    P      +  S    S  ++   S S+ + S P      S L SST 
Sbjct: 128 YTPSSTESSSLLDPSSVSSAILPS----STSVEVSISSSSLSSSDPLTSSTFSSLSSSTS 183

Query: 422 IWYLPPFFTLKAADVALPAPLQT--SFLSSRTLDLSAASPVHTFQLTETSAASFLVTSWL 249
               P   +  ++  +  AP  T  S+LSS ++  S++SP  +   T TS  S L TS +
Sbjct: 184 SSQ-PSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTS--SSLSTSSI 240

Query: 248 *AVAAWLTSTIANVRS 201
            + ++  +ST +++ S
Sbjct: 241 PSTSSSSSSTSSSLSS 256


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 499 SHLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGVYPRKFPXGPRSGSEPDSFALR 663
           S L PLD+S  EK         K      +E G+YP++ P   +  S+   ++L+
Sbjct: 341 SSLSPLDHSSAEKEMQKAPAKNKRRRTGSLETGLYPKESPTPSKKRSKRVLWSLK 395


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 609 SRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERP 508
           S  + PFD +S+   S+  LEGL    N+    P
Sbjct: 390 SNFYQPFDSISSMVLSKQALEGLELFVNQTDHTP 423


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 102  VLQKKQTSKRETRLTIQLPKI 40
            VLQK +T KR T LT+  P+I
Sbjct: 1044 VLQKFKTKKRSTFLTLNYPRI 1064


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,416,217
Number of Sequences: 5004
Number of extensions: 67856
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)