Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_J12
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1080 + 23815232-23817040 31 0.93
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 30 2.1
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 3.7
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 29 3.7
07_03_1350 - 25955624-25955842,25955877-25955922,25956456-25956751 29 6.5
02_03_0099 + 15206282-15206917 29 6.5
01_05_0208 - 19291953-19292552,19293027-19293134,19293231-192933... 29 6.5
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 28 8.6
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482... 28 8.6
>07_03_1080 + 23815232-23817040
Length = 602
Score = 31.5 bits (68), Expect = 0.93
Identities = 27/91 (29%), Positives = 44/91 (48%)
Frame = +1
Query: 361 SGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKN 540
SG G+A+S A GGR+ Q+ L C+ S VA D ++ L + + E
Sbjct: 173 SGGGTASSGAVGGGGGGRWASQLLL----ECARS------VAARDSQRVQQLMWMLNELA 222
Query: 541 KPFKQTSGKVVGAYFVEWGVYPRKFPXGPRS 633
P+ K + +YF++ G++ R GPR+
Sbjct: 223 SPYGDVEQK-LASYFLQ-GLFARLTASGPRT 251
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 872 QLHQLPRSYLCRARSRTIIPFEVSAGPPQGSWIETL 765
QL+ +PRS+L + T+I FE + G P + T+
Sbjct: 682 QLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAVRTV 717
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +1
Query: 346 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRP 513
++E+WSGA SA K KK + ++ DG S VEIV+ + L
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELAS 676
Query: 514 LDYSIGEKN 540
++ S E N
Sbjct: 677 VELSFAENN 685
>02_05_0197 -
26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -1
Query: 239 AAWLTSTIANVRSPQPRFGXPWRAAGADGERGHREYERYHPMPHNWFYKKSKQVNVRRAS 60
AAW ++ + R P ++G G R+ ER +P+P + +K + +RRA
Sbjct: 635 AAWSAGSLTDHRPASP--SPICSPVSSNGGEGCRDVERTNPVPPRFIHKATPARLMRRAR 692
Query: 59 QSN 51
S+
Sbjct: 693 SSH 695
>07_03_1350 - 25955624-25955842,25955877-25955922,25956456-25956751
Length = 186
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 257 SWL*AVAAWLTSTIANVRSPQPRFGXPW 174
SWL AV AW +R P+PR W
Sbjct: 77 SWLDAVRAWAKLACLKLRPPEPREKVAW 104
>02_03_0099 + 15206282-15206917
Length = 211
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 328 SRVLLDKKEVWSGAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 495
+R++++ + + A +ATS A + GGRY + + ++ S++E E+VV + D
Sbjct: 38 ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96
>01_05_0208 -
19291953-19292552,19293027-19293134,19293231-19293344,
19293464-19293573,19293720-19293808,19293942-19294138,
19294241-19294402,19294501-19294619,19294739-19294826,
19294911-19295016,19295157-19295245,19295351-19295503,
19295631-19295723,19295823-19295889,19296217-19296329,
19296453-19296548,19297963-19298139
Length = 826
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 866 HQLPRSYLCRARSRTIIPFEVSAGPPQGSWIETL 765
+ +PRS+L T++ FE + G P G + T+
Sbjct: 703 YHVPRSFLAAGEPNTLLLFEEAGGDPSGVALRTV 736
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 200 PQPRFGXPWRAAGADGERGHREYERYHPMPHNWFYKKSKQVN 75
PQPR W G G+ + ++ PM F K++QVN
Sbjct: 783 PQPRNENTWVYHGRPGDGKYGTTDKSRPMSSMGFITKNQQVN 824
>03_06_0250 +
32645600-32646649,32647549-32647791,32648008-32648229,
32648375-32648443,32650681-32650768,32651147-32651230,
32651494-32651582,32651933-32652046,32652513-32652647,
32652847-32653071
Length = 772
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 727 ETALNFFQTVIDAITTTNRNEAVEQMSQVRN 635
E+ L+FF V DAI+ ++ A EQ + VR+
Sbjct: 707 ESKLSFFPGVADAISRSSNRSAKEQQAAVRH 737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,093,359
Number of Sequences: 37544
Number of extensions: 518384
Number of successful extensions: 1531
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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