Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J12
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    30   1.9  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    29   5.9  
Z70307-14|CAA94338.2|  409|Caenorhabditis elegans Hypothetical p...    23   6.8  

>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
            protein Y67D8C.9 protein.
          Length = 1073

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -1

Query: 518  SRGLKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQ-TSFLS 342
            S   K L   +   +ST +  ++ S LQS   + Y P F     A++A  +  + T+  S
Sbjct: 944  SHDQKLLRRTARAIVSTKNAVVYASALQSDFSLHYNPTFRKYLWAEIAKMSTFEKTALFS 1003

Query: 341  SRTLDLSAASPV--HTFQ-LTETSAASFLVTSW 252
            + + D+  AS +  H+ + + E      L+T+W
Sbjct: 1004 TNSTDILPASRILLHSVKTIDELQQIRGLLTNW 1036


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 206 RSPQPRFGXPWRAAGADGERGHREYERYHPMP 111
           RSP+ R+G      G  G   +++Y+R +P P
Sbjct: 43  RSPRARYGGGGGGGGGGGRGRNQQYDRENPQP 74


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/78 (25%), Positives = 29/78 (37%)
 Frame = +1

Query: 295 WNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVE 474
           W  W G   +   +   KKEV      + + A K+ K  R        +SDG S S G E
Sbjct: 413 WTYWYGGGRELW-IPKKKKEVPKKRRQSLADASKIAKRARLGASSTATDSDGSSGSSGSE 471

Query: 475 IVVADTDGSHLRPLDYSI 528
                +      P  Y++
Sbjct: 472 EATEGSSFMRALPAGYTV 489


>Z70307-14|CAA94338.2|  409|Caenorhabditis elegans Hypothetical
           protein C39E9.12 protein.
          Length = 409

 Score = 23.4 bits (48), Expect(2) = 6.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 863 QLPRSYLCRARSRTIIPFEVSAGPPQGSWIETLKSSRP 750
           Q+P+   CR  SR IIP  V        +I T K + P
Sbjct: 304 QIPKP--CRLTSRKIIPATVPEDDTFTEYISTPKGTTP 339



 Score = 23.4 bits (48), Expect(2) = 6.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 644 GSEPERGPXGNFLGYTPHSTK 582
           G+ P R P     GYTPHST+
Sbjct: 336 GTTPTRVPRR--AGYTPHSTR 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,367,420
Number of Sequences: 27780
Number of extensions: 398086
Number of successful extensions: 1104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)