Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J11
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74475-1|CAA98960.1|  107|Caenorhabditis elegans Hypothetical pr...    45   6e-05
U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical p...    36   0.052
AF043700-5|AAB97575.2|  573|Caenorhabditis elegans Lipid deplete...    32   0.64 
AC024776-11|AAK68461.1|  349|Caenorhabditis elegans Hypothetical...    31   1.1  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    31   1.5  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    30   2.0  
Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    30   2.6  
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    30   2.6  
U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain (pr...    29   3.4  
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U80447-1|AAB37806.1|  746|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical ...    28   7.9  
AJ276590-1|CAB91651.1|  679|Caenorhabditis elegans LET-413 prote...    28   7.9  
AF068716-10|AAC17752.2|  679|Caenorhabditis elegans Lethal prote...    28   7.9  

>Z74475-1|CAA98960.1|  107|Caenorhabditis elegans Hypothetical
           protein R04F11.2 protein.
          Length = 107

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 22/71 (30%), Positives = 45/71 (63%)
 Frame = +1

Query: 148 VRISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASA 327
           V ISPLI+FGR++ L++GV+YG F   ++ +  A +RE + ++ V    +  ++K+  + 
Sbjct: 18  VTISPLIRFGRYAALSLGVVYGFFRLRQIREYHADIREWDHEKAVAAAEEAAKKKKWLAK 77

Query: 328 LEIKALEEMAS 360
            E++ L ++ +
Sbjct: 78  DEMRYLMQVVN 88


>U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical
           protein C34D4.1 protein.
          Length = 512

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 214 AFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKER 318
           A H+  L KKE ++RE +AKEK   + K   EKER
Sbjct: 264 AHHKEWLQKKEREIREKKAKEKAAAEQKAATEKER 298


>AF043700-5|AAB97575.2|  573|Caenorhabditis elegans Lipid depleted
           protein 6 protein.
          Length = 573

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +1

Query: 238 KKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMAS 360
           K+  K RE E++++VIR   + +E++ A   E+KA+ E A+
Sbjct: 352 KQMKKRREQESEQRVIRRLTIVKEQQDAEEAEVKAIRENAA 392


>AC024776-11|AAK68461.1|  349|Caenorhabditis elegans Hypothetical
           protein Y41D4B.11 protein.
          Length = 349

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 238 KKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*KDKI 390
           KKE + REIE K   I++A+ K E+E     E++ L+E      +K K+ +
Sbjct: 143 KKEQEKREIENK---IKEARKKREQEARRLEEVEKLKEQKKAEKRKMKEAL 190


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
            protein Y111B2A.14 protein.
          Length = 1481

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 223  QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 351
            + R+ K++ K  E E KE+  R+ K ++E+E    +E K  EE
Sbjct: 995  EERMKKEQEKQEEKERKEREKREEKERKEREIREIMERKKREE 1037



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = +1

Query: 208  YGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERAS---ALEIKALEEMASGTAKK* 378
            +G F +  L +++AK  E E  +K+  + KLK+EKE+ +    +E K  EE      +K 
Sbjct: 949  FGKF-EKALEQRKAKKEEAERLKKL--EEKLKKEKEKQAEKDRIEAKKFEERMKKEQEKQ 1005

Query: 379  KDK 387
            ++K
Sbjct: 1006 EEK 1008


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 223 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMA 357
           Q + +++  +LR  E K  +    +L+E+ ER    EIK LEE A
Sbjct: 214 QRKRNEELKRLRIAEEKRLLEEQQRLREQMERERLAEIKRLEEAA 258


>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical protein
            ZC434.5 protein.
          Length = 1149

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 247  AKLREIEAKEKVIRDAKLKEEKERASALEIKAL 345
            A L+EIE +  V+RDAK K+ K + SA  I  L
Sbjct: 1088 ALLKEIEEQGAVVRDAKSKDPKSQDSADAINKL 1120


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +1

Query: 190 LTVGVLYGAFHQNRLSKKE---AKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMA 357
           LT+G     F +   +++E    K +E E + K+    K ++EKERA   E + +EE A
Sbjct: 460 LTIGYTPNQFQEIERAQREFKNQKKQEEEIRAKLEAKKKAEQEKERAKREEQRRIEEAA 518


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +1

Query: 190 LTVGVLYGAFHQNRLSKKE---AKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMA 357
           LT+G     F +   +++E    K +E E + K+    K ++EKERA   E + +EE A
Sbjct: 460 LTIGYTPNQFQEIERAQREFKNQKKQEEEIRAKLEAKKKAEQEKERAKREEQRRIEEAA 518


>U70854-5|AAB09157.1|  589|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 11 protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 223 QNRLSKKEAKLREIEAKEKVIRDAKLKEEKER 318
           Q  + +++ +  E EAK+K   D K KEE+ER
Sbjct: 316 QEAIDREKREKEEAEAKQKEEADRKAKEERER 347


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +1

Query: 232 LSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 333
           + K EAKL+EIE ++K   +A L E++++ + ++
Sbjct: 621 IEKLEAKLQEIEEEKKNALNASLAEKEQQTAQIQ 654


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = +1

Query: 232 LSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 333
           + K EAKL+EIE ++K   +A L E++++ + ++
Sbjct: 621 IEKLEAKLQEIEEEKKNALNASLAEKEQQTAQIQ 654


>U80447-1|AAB37806.1|  746|Caenorhabditis elegans Hypothetical
           protein F55F8.2a protein.
          Length = 746

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 238 KKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK 375
           KK+ K +++E  E+   DAK  EE+  A  L  K  E+MA+   +K
Sbjct: 50  KKKNKPKKVENTERPEEDAKCVEERRLAKKLRRK--EQMAANRKQK 93


>AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical
           protein T06D10.2 protein.
          Length = 479

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 238 KKEAKLREIEAKEKVIRDAKLKEEKER 318
           KKE K +E E K+K   + K+K+++ER
Sbjct: 149 KKEEKRKEAEEKKKKDEEEKMKKDEER 175


>AJ276590-1|CAB91651.1|  679|Caenorhabditis elegans LET-413 protein
           protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 226 NRLSKKEAKLREIEAKEKV---IRDAKLKEEKERASALEIKALEEMASGT 366
           N +++  A +R I+A       +R+A L  E+E   A  + +L  +A+GT
Sbjct: 521 NSINRDLADIRFIDAPASAQNGVREATLSPEREERMATSLSSLSNLAAGT 570


>AF068716-10|AAC17752.2|  679|Caenorhabditis elegans Lethal protein
           413, isoform a protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 226 NRLSKKEAKLREIEAKEKV---IRDAKLKEEKERASALEIKALEEMASGT 366
           N +++  A +R I+A       +R+A L  E+E   A  + +L  +A+GT
Sbjct: 521 NSINRDLADIRFIDAPASAQNGVREATLSPEREERMATSLSSLSNLAAGT 570


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,191,189
Number of Sequences: 27780
Number of extensions: 185625
Number of successful extensions: 836
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)