Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J10
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    30   0.50 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.7  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 868 RGGNKGGXXXGVXPGGXPGIFXXPRGGGXXXGXGGGFXXXXXGG 737
           RGG++GG   G   GG  G      GGG   G  GGF     GG
Sbjct: 147 RGGSRGGFG-GNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = -3

Query: 868 RGGNKGGXXXGVXPGGXPGIFXXPRGGGXXXGXGGGFXXXXXGGGA 731
           RGG++GG   G   GG  G F   RGG    G GG        GGA
Sbjct: 11  RGGSRGGR--GGFNGGRGG-FGGGRGGARGGGRGGARGGRGGRGGA 53


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +1

Query: 493 KXPPPPGXGXXXFGPXXLXPPXXPXAPGFRGGXXVXPPXXGGXXXSPXXGXTP 651
           K PPPP        P     P  P AP   GG    PP  G     P     P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 25/76 (32%), Positives = 25/76 (32%)
 Frame = -3

Query: 769 GGGFXXXXXGGGALLXNPPQXAXFRGXGPXGGLXXKXFXXGXPRXXGKXXXPPLXGXXPX 590
           GGGF     G G     PP    F G G  GG        G     G    P   G    
Sbjct: 187 GGGFGGFGGGSGG---PPPGPGGFGGFGGFGGEGHHHGGHG-----GFGGGP--GGFEGG 236

Query: 589 PPPESXGPGXXGGGXG 542
           P     GPG  GGG G
Sbjct: 237 PGGFGGGPGGFGGGLG 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,305
Number of Sequences: 5004
Number of extensions: 18499
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)