Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J04
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   2.7  
06_03_0218 + 18219956-18220555                                         30   2.7  
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225...    29   6.3  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.4  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +2

Query: 521 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 667
           CWR  +        T  D Q    +    +KD    P + PSC L+F P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIP 331


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = -3

Query: 825 PDKAQRSG*TGVRAHSQLGANDXHRTEIPTA*AMRKRHASRREKGGQVSRKRQGRNRRAH 646
           P  + R+G  G+    ++ A    +T  P     R R   R E  G  + KR+GR R   
Sbjct: 75  PVLSPRNG--GLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGS 128

Query: 645 EGASRGKRLVS 613
            G  RGKR  S
Sbjct: 129 SGGLRGKRRAS 139


>12_01_0298 -
           2250517-2251235,2251331-2251577,2251615-2252951,
           2256029-2256188
          Length = 820

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -3

Query: 810 RSG*TGVRAHSQLGANDXHRTEIPTA*AMRKRHASRREKGGQVSRKRQGRNRRAHEGAS 634
           R G  G+R+    G +D  R+++ +    R+R   RR +  Q  ++RQ  NRR  +G +
Sbjct: 433 RPGSAGMRSDDG-GDSDGARSKLVSLRGGRRRGRRRRRRRRQRQQRRQEGNRRRLDGGA 490


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,169,087
Number of Sequences: 37544
Number of extensions: 505990
Number of successful extensions: 1572
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)