Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J03
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    38   0.001
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.29 
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    31   0.29 
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   4.7  
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    27   4.7  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    26   8.2  

>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
 Frame = +2

Query: 341 IGVLALFLIDAVREIRKYSNVTDVSHTHLATEMKTH----VKLFRAQRNFYIIGFAIFLT 508
           I +L LF  D+VR + + +   D++    +T            F AQRN Y+ G A+FL+
Sbjct: 56  ICILILFA-DSVRRVVRVTKEYDLAIAAPSTTESARSGYKASQFYAQRNLYLCGSALFLS 114

Query: 509 FVIRRLITMLIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSE 646
            V+ R    L      + K + +  Q E +   AK      TL+++
Sbjct: 115 LVVNRYYLALEAMIAAQDKMQALQTQVEASTNNAKAVEELETLRTK 160


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = +1

Query: 181 IQWTFIAGYLYFE--IALXDADDITYIQS*KMESIFQITSVFNVSRKRSCIFLCVHRCVG 354
           + W  + GY   E  I L   +DI  IQ+ +  S+F +      + ++S  F C+   + 
Sbjct: 575 LNWGLVNGYPKTEGRIVLLPRNDIVLIQADQPTSVFDLCWTIKPTYEKSSNFSCLQLPIP 634

Query: 355 VVFD*CSERDTEIFKCYGREPHSFSYRNENSRQAISSPKKLL 480
           V+        T          +   Y N+NS++ +  P  LL
Sbjct: 635 VLNTPILTPVT--INIQSTTYYLIGYANQNSKKTLDQPTSLL 674


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +2

Query: 530 TMLIIQDELKQKA------EKIIKQAEETVKQAKTSILANTLQSEELQHYDE 667
           T +II+D+  Q+       EKI    EET+  AK+ +  +  + EE++ Y+E
Sbjct: 409 TEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEE 460


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 266 RWNQFFKSRLFSMFRENVAVYFYVFIGVLALFL-IDAVREI 385
           RW++FF+    ++    + + + V +G +A+F+ +D +R +
Sbjct: 436 RWHKFFQGWFITLVTFMIILLWTVPVGAIAVFINLDTIRRL 476


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +2

Query: 317 VAVYFYVFIGVLALFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFY 481
           VA+   + +GV ++ L +   ++    + T +  T LAT+++T  +LFR + N Y
Sbjct: 20  VAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLY 74


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 605 QAKTSILANTLQSEELQHYDE 667
           Q+K  +L NTL  EEL  YD+
Sbjct: 140 QSKIVVLCNTLNFEELDVYDD 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,087
Number of Sequences: 5004
Number of extensions: 54402
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)