Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J03
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0658 + 30676990-30677388                                         33   0.30 
06_03_0678 + 23459752-23460379,23460993-23461068,23461146-234612...    31   1.2  
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484     29   4.9  
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162...    29   6.5  
12_02_1271 + 27472457-27473030,27473122-27473197,27473277-274733...    28   8.6  
07_03_0092 - 13329252-13329761,13329957-13330056,13330146-13330354     28   8.6  

>02_05_0658 + 30676990-30677388
          Length = 132

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 13/60 (21%), Positives = 35/60 (58%)
 Frame = +2

Query: 407 DVSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLITMLIIQDELKQKAEKIIKQ 586
           D  H   +  ++    + ++QRN  +I  A+ L +++  + ++++  D+L+Q+ +K+ K+
Sbjct: 71  DEHHCTPSEHLRHQKSIMKSQRNALLIAAALLLYWILFSITSLVVRLDQLQQRVDKLKKR 130


>06_03_0678 +
           23459752-23460379,23460993-23461068,23461146-23461261,
           23462425-23462939
          Length = 444

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 457 ISSPKKLLYYRLCNFPDIRNT*TNHNVDY 543
           +SSP+   +  +CN P+ RNT  NH++ +
Sbjct: 307 LSSPEGYFHTVICNVPEFRNTTVNHDLHF 335


>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
          Length = 519

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 386 RKYSNVTD--VSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVI 517
           R++  +T   +SHT   +  K   ++F AQR    + F+ FLT  I
Sbjct: 203 RRFEELTADVISHTAFGSSYKEGKQVFLAQRELQFLAFSTFLTVQI 248


>03_02_0671 +
           10315260-10315370,10315984-10316027,10316141-10316204,
           10316278-10316392,10316504-10316571,10316917-10317014,
           10317543-10317657,10318425-10318641,10319541-10319667,
           10319803-10319857,10319997-10320093,10320748-10320876,
           10320964-10321097,10321660-10321746,10321998-10322069,
           10322320-10322359,10322535-10322779,10323587-10323764,
           10323931-10324136,10324681-10324977
          Length = 832

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 140 IICSVKLTTIAPQYDYYN 87
           +I S+KLT   P+YDYYN
Sbjct: 218 VIFSMKLTYRTPEYDYYN 235


>12_02_1271 +
           27472457-27473030,27473122-27473197,27473277-27473392,
           27473840-27474354
          Length = 426

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 457 ISSPKKLLYYRLCNFPDIRNT*TNHNVDY 543
           ISSP+   +  +CN  + +NT  NH++ Y
Sbjct: 289 ISSPEGYFHTVVCNAEEFKNTTVNHDLHY 317


>07_03_0092 - 13329252-13329761,13329957-13330056,13330146-13330354
          Length = 272

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 386 RKYSNVTD--VSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLT 508
           R++  +T   +SHT   +  K   ++F AQR    + F+ FLT
Sbjct: 21  RRFEELTANVISHTVFGSSYKEGKQVFLAQRELQFLAFSTFLT 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,126,469
Number of Sequences: 37544
Number of extensions: 287188
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)