Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_J03
(881 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein. 91 7e-19
AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical... 91 7e-19
Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical p... 30 1.9
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 30 2.5
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 2.5
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 29 5.8
AL161712-2|CAC70128.1| 313|Caenorhabditis elegans Hypothetical ... 28 7.7
>AF304120-1|AAG50233.1| 213|Caenorhabditis elegans 4D656 protein.
Length = 213
Score = 91.5 bits (217), Expect = 7e-19
Identities = 49/134 (36%), Positives = 75/134 (55%)
Frame = +2
Query: 248 PIFSPRRWNQFFKSRLFSMFRENVAVYFYVFIGVLALFLIDAVREIRKYSNVTDVSHTHL 427
P P W++ FKSRLF+ ++ +Y F VL + D VRE KY+ +
Sbjct: 25 PWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLFILFADGVRETMKYNGLEGQMGRTA 84
Query: 428 ATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLITMLIIQDELKQKAEKIIKQAEETVKQ 607
++ H++LFRAQRN YI GFA+ L VI+R++T+L +L+ +E ++QAE K
Sbjct: 85 ESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTLLGRAAQLEAASEAAMRQAESATKT 144
Query: 608 AKTSILANTLQSEE 649
A+T L N+ + E
Sbjct: 145 ART--LMNSADTNE 156
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 175 MSIQWTFIAGYLYFEIAL 228
M++QWT +AG LY EIA+
Sbjct: 1 MTLQWTIVAGVLYAEIAI 18
>AC024817-36|AAF59580.1| 213|Caenorhabditis elegans Hypothetical
protein Y54G2A.18 protein.
Length = 213
Score = 91.5 bits (217), Expect = 7e-19
Identities = 49/134 (36%), Positives = 75/134 (55%)
Frame = +2
Query: 248 PIFSPRRWNQFFKSRLFSMFRENVAVYFYVFIGVLALFLIDAVREIRKYSNVTDVSHTHL 427
P P W++ FKSRLF+ ++ +Y F VL + D VRE KY+ +
Sbjct: 25 PWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLFILFADGVRETMKYNGLEGQMGRTA 84
Query: 428 ATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLITMLIIQDELKQKAEKIIKQAEETVKQ 607
++ H++LFRAQRN YI GFA+ L VI+R++T+L +L+ +E ++QAE K
Sbjct: 85 ESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTLLGRAAQLEAASEAAMRQAESATKT 144
Query: 608 AKTSILANTLQSEE 649
A+T L N+ + E
Sbjct: 145 ART--LMNSADTNE 156
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 175 MSIQWTFIAGYLYFEIAL 228
M++QWT +AG LY EIA+
Sbjct: 1 MTLQWTIVAGVLYAEIAI 18
>Z70753-11|CAA94766.1| 244|Caenorhabditis elegans Hypothetical
protein F40F9.2 protein.
Length = 244
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -3
Query: 657 CCNSSDCKVFARILVLACFTVSSACFIIFSAFCFNSSCIINIVISLRITNV 505
CC + + I++L FT+S+A +F C+N + +++I L IT V
Sbjct: 86 CCGNLRRQFPVNIILLTIFTLSAAVMTMFVTACYN---VQSVLICLCITTV 133
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +2
Query: 503 LTFVIRRLITMLIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSEELQHYDEINS 676
L F+I RL+ + + + ++ K I+ AEE +K A + A+ +++E DE+++
Sbjct: 188 LLFIIGRLLKLNVKEHKISSKRPGIVMSAEE-LKTAPKQLSADEKRAKEKSVLDEVDA 244
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +2
Query: 503 LTFVIRRLITMLIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSEELQHYDEINS 676
L F+I RL+ + + + ++ K I+ AEE +K A + A+ +++E DE+++
Sbjct: 1251 LLFIIGRLLKLNVKEHKISSKRPGIVMSAEE-LKTAPKQLSADEKRAKEKSVLDEVDA 1307
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 515 IRRLITMLIIQDELKQKAEKIIKQAEETVKQAKTSILANTLQSEELQHYDEINSQ 679
+RR +L + + K+K E +I + VK K + + E LQ E +Q
Sbjct: 393 LRRKARLLTVVEAAKEKLESVISDLQVEVKALKNKVEFLEKERENLQSQSESQTQ 447
>AL161712-2|CAC70128.1| 313|Caenorhabditis elegans Hypothetical
protein Y66D12A.3 protein.
Length = 313
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 615 VLACFTVSSACFIIFSAFCFNSSCIINIVISLRITNVRKIAKPII 481
+L CF F+I AF S ++NI+ S+ VR KPI+
Sbjct: 265 ILNCFENRLPEFLIDVAFGIESEEVVNIIDSVNSPVVRLTEKPIL 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,258
Number of Sequences: 27780
Number of extensions: 299141
Number of successful extensions: 912
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -