Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J02
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    29   0.67 
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   6.2  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   8.2  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 400 NISCNNEYFYG*NLSYLFDVTLKYGLIKLIN 308
           N  CNNEY Y  N   L  V LK G+ K+++
Sbjct: 49  NFECNNEYQYINNWKVLQQVFLKKGIDKVVD 79


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 196 ITICIT-IHYHLK*FHITIITATICQYEEKQLLNYSD 89
           + ICI  + +  K F    +T TI ++E+K L+N  D
Sbjct: 440 LDICIEDVQFKSKAFFPPTVTITIFEHEDKNLMNVFD 476


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 4   VFXTXHYRESLRFDLVKIGRLHV-YLSKVN 90
           V+   ++   +RFD+ ++GRL + YL+ VN
Sbjct: 603 VYTADNFLHHIRFDINELGRLELDYLTSVN 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,178
Number of Sequences: 5004
Number of extensions: 52477
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)