Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_J02
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0033 - 7248131-7248711,7248947-7249079,7249470-7249994,725... 32 0.70
02_01_0607 - 4549248-4549290,4550193-4550337,4550438-4551185,455... 31 1.6
04_03_0010 - 9318031-9318275,9318364-9319123,9319528-9319845,931... 30 2.8
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 29 3.8
07_03_1450 + 26620178-26620456,26622122-26622775 29 3.8
03_02_0563 + 9471025-9471093,9471490-9471601,9471944-9472255,947... 29 3.8
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682... 29 3.8
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 29 5.0
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196 29 5.0
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 29 5.0
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243... 29 5.0
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 29 5.0
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 29 5.0
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 29 5.0
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 29 5.0
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 29 5.0
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 29 5.0
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 29 6.6
11_06_0299 - 22086964-22087002,22087878-22087978,22088079-220888... 28 8.7
>10_03_0033 -
7248131-7248711,7248947-7249079,7249470-7249994,
7250545-7250764,7250913-7251145
Length = 563
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 605 KKSILXV*FVCNASLMFQNVVA*WPXSTHDTTIIN 709
K+ V FVC+ + F V+A WP S HD + N
Sbjct: 461 KEKSQNVMFVCDFDMRFTFVLAGWPGSVHDMRVFN 495
>02_01_0607 -
4549248-4549290,4550193-4550337,4550438-4551185,
4551504-4551980,4552066-4552374
Length = 573
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIINH 712
+C+ + F VA WP S HD+ I++H
Sbjct: 472 ICDFDMRFIFAVAGWPGSAHDSRILSH 498
>04_03_0010 -
9318031-9318275,9318364-9319123,9319528-9319845,
9319921-9320229,9320594-9321013
Length = 683
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F +VA WP S HD + N
Sbjct: 562 VCDFDMRFTFIVAGWPGSAHDMRVFN 587
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F V+A WP S HD + N
Sbjct: 725 VCDFDMRFSFVLAGWPGSVHDMRVFN 750
>07_03_1450 + 26620178-26620456,26622122-26622775
Length = 310
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 209 YRPHYHYLHHNPLSFEIIP--YHYHH 138
++P++H+ H NP S P YH+HH
Sbjct: 136 HQPYHHHHHLNPFSLPPPPPAYHHHH 161
>03_02_0563 +
9471025-9471093,9471490-9471601,9471944-9472255,
9472341-9472783
Length = 311
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
+C+ + F +VA WP S HD + N
Sbjct: 124 ICDFDMRFTFIVAGWPGSAHDMRVFN 149
>02_05_0880 +
32466538-32467083,32467333-32467644,32467731-32468201,
32468481-32469246,32469332-32469774
Length = 845
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
+C+ + F +VA WP S HD + N
Sbjct: 658 ICDFDMRFALIVAGWPGSAHDMRVFN 683
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F V+A WP S HD + N
Sbjct: 684 VCDFDMRFTFVLAGWPGSVHDMRVFN 709
>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
Length = 676
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F V+A WP S HD + N
Sbjct: 485 VCDFDMRFTFVLAGWPGSVHDMRVFN 510
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F V+A WP S HD + N
Sbjct: 725 VCDFDMRFTFVLAGWPGSVHDMRVFN 750
>07_03_1521 +
27419859-27420106,27422050-27423363,27423885-27424308,
27424540-27424968,27425228-27425305,27426581-27426839,
27428542-27428552
Length = 920
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +1
Query: 400 LFIAIAKLYLIFVVLQNHTQQEFYNTAGHSYTNTITW*AIYLHSYYTLIPLHFIFVLQIQ 579
L+ +A + L+ +Q+H+++ +NT G T IT ++ S +T+ F+L +
Sbjct: 168 LWSPLAAILLLTPTMQHHSRELVWNTTGGRLTPKITAEINFIPSRFTVAKWTAFFILLVV 227
Query: 580 I 582
+
Sbjct: 228 V 228
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F V+A WP S HD + N
Sbjct: 695 VCDFDMRFTFVLAGWPGSVHDMRVFN 720
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F V+A WP S HD + N
Sbjct: 725 VCDFDMRFTFVLAGWPGSVHDMRVFN 750
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F V+A WP S HD + N
Sbjct: 697 VCDFDMRFTFVLAGWPGSVHDMRVFN 722
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F V+A WP S HD + N
Sbjct: 677 VCDFDMRFTFVLAGWPGSVHDMRVFN 702
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F V+A WP S HD + N
Sbjct: 686 VCDFDMRFTFVLAGWPGSVHDMRVFN 711
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIIN 709
VC+ + F V+A WP S HD + N
Sbjct: 679 VCDFDMRFTFVLAGWPGSVHDMRVFN 704
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIINH 712
V + LMF + A W S HD+T++ H
Sbjct: 479 VVDFDLMFTYISAGWEGSAHDSTVLRH 505
>11_06_0299 -
22086964-22087002,22087878-22087978,22088079-22088826,
22089201-22089373,22089403-22089676,22089761-22090069
Length = 547
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 632 VCNASLMFQNVVA*WPXSTHDTTIINH 712
+ N + F VA WP S HD+ I++H
Sbjct: 462 IYNFDMRFIFAVAGWPGSAHDSRILSH 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,719,548
Number of Sequences: 37544
Number of extensions: 260865
Number of successful extensions: 555
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -