Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_J02
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021501-1|CAA16414.2|  352|Caenorhabditis elegans Hypothetical ...    31   0.83 
Z83240-3|CAB05813.2|  483|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AL021501-1|CAA16414.2|  352|Caenorhabditis elegans Hypothetical
           protein Y61B8A.1 protein.
          Length = 352

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 516 YLPSF-LLHTDTSTFYICVTDSN-IGEEFRNRKRVFXMCNL 632
           Y  SF L    T  +YIC+  SN I ++ + R++VF  C L
Sbjct: 221 YFASFPLFQVSTLIYYICIAPSNTISKDTQQRQKVFLFCIL 261


>Z83240-3|CAB05813.2|  483|Caenorhabditis elegans Hypothetical
           protein T23H4.1 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 364 FNHKSTRYYNLYLFIAIAKLYLIFVVLQNHTQQEFYNTAGHSY 492
           FN +    Y  YL++AI  L+L+ V+ Q +    F     H Y
Sbjct: 211 FNVRYYESYLTYLYLAIKCLFLMNVLTQMYFMSRFLELDSHRY 253


>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +1

Query: 358 INFNHKSTRYYNLYLFIAIAKLYLIFVVLQNHTQQEFYNTAGHS--YTNTITW*AIYLHS 531
           ++ +H +  ++N  L  A   +   F++        F+     S    + +TW   Y+H 
Sbjct: 297 LSMSHFTDHFWNHLLLNAFVSVDTFFLLSGIVVAYLFFKQKHKSSQIKSPLTWIIFYMHR 356

Query: 532 YYTLIPLHFIFV 567
           Y  L P + IF+
Sbjct: 357 YLRLTPPYMIFI 368


>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 516 YLPSFLL-HTDTSTFYICVTDSN-IGEEFRNRKRVFXMCNL 632
           Y+ SF L    T  +YIC+  SN    + + +++VF +C L
Sbjct: 221 YISSFFLFQVATLIYYICIAPSNTTSRDTQQKQKVFLICIL 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,246,836
Number of Sequences: 27780
Number of extensions: 285192
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)