Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I24
         (1002 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    27   5.5  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   7.2  
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    26   9.6  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   9.6  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    26   9.6  

>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 491 FDSAIRSRRLVVG*PATRPSVHFLPTCR 408
           F++   SRRLVVG PA+  +++ +PT +
Sbjct: 54  FEAQEFSRRLVVGRPASVSTLYVIPTSK 81


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 451 HPTTKRRDRIAESKTREYSDASIR 522
           HPT +    I   K  EY DAS+R
Sbjct: 432 HPTLRTNSTICLGKIAEYLDASVR 455


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 161 INKKPHTS*LRLHSYF-IARIEITGSRQTPSFLMWPSSV 48
           I+ KP +  L  ++YF I  IE  GS+ + +F+  PSS+
Sbjct: 131 IDVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSI 169


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 464 SVETGLLSQRPENTVMQALESLNDTQVNDFLSGKSPLNLTMRLGDHMMLIQLQLSTLHS 640
           +V  G L+ RP ++   ++ S + +Q N+FL         +R   H     L    LHS
Sbjct: 413 TVSLGYLNDRPNHSKKNSVTSTSSSQFNNFLEQNQK---AVRSARHRHYASLDEQGLHS 468


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 406 GRHVGRKWTDGRVAGHPTTKRRDRIAESKTREYSD 510
           GR  GR+ T+  +  HP +K    +AE K +E +D
Sbjct: 231 GRWRGREKTECGLHSHPQSKFAQYMAELKKKETAD 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,063
Number of Sequences: 5004
Number of extensions: 63308
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)