Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I24
         (1002 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC094778-1|AAH94778.1|  468|Homo sapiens midnolin protein.            130   6e-30
BC067773-1|AAH67773.1|  434|Homo sapiens arginine/serine-rich co...    32   3.8  
BC008684-1|AAH08684.2|  434|Homo sapiens arginine/serine-rich co...    32   3.8  
AB212664-1|BAE93762.1|  434|Homo sapiens hypothetical protein pr...    32   3.8  

>BC094778-1|AAH94778.1|  468|Homo sapiens midnolin protein.
          Length = 468

 Score =  130 bits (315), Expect = 6e-30
 Identities = 63/137 (45%), Positives = 94/137 (68%), Gaps = 2/137 (1%)
 Frame = +2

Query: 236 STQSTDITLNIHTTTGGNFSVSLNGKSTVEHXXXXXXXXXXXXXDRICLLHRERQLRDGT 415
           + ++  ++L IH+TTG  + +++    TVE              +R+ LLH++ +L  G 
Sbjct: 25  AAEAAPMSLAIHSTTGTRYDLAVPPDETVEGLRKRLSQRLKVPKERLALLHKDTRLSSGK 84

Query: 416 LEENGLMDGSRVILLPSVETGLLSQ--RPENTVMQALESLNDTQVNDFLSGKSPLNLTMR 589
           L+E G+ DGS++ L+P+VE GL+SQ  RPE +VMQALESL +TQV+DFLSG+SPL L +R
Sbjct: 85  LQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQVSDFLSGRSPLTLALR 144

Query: 590 LGDHMMLIQLQLSTLHS 640
           +GDHMM +QLQL+  H+
Sbjct: 145 VGDHMMFVQLQLAAQHA 161


>BC067773-1|AAH67773.1|  434|Homo sapiens arginine/serine-rich
           coiled-coil 2 protein.
          Length = 434

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = +1

Query: 304 ERQKHRRASKETSFKETKGVKGSNMLTTSRETIEGRHVGRKWTDGRVAGHPTTKRRDRIA 483
           ++   +  S+E + KE    KG   L +S E  E RH  ++    R   H  ++ R+R  
Sbjct: 77  DKSSKKHKSEEHNDKEHSSDKGRERLNSS-ENGEDRHKRKERKSSRGRSHSRSRSRERRH 135

Query: 484 ESKTREYSDASIRVLE 531
            S++RE   +  R  E
Sbjct: 136 RSRSRERKKSRSRSRE 151


>BC008684-1|AAH08684.2|  434|Homo sapiens arginine/serine-rich
           coiled-coil 2 protein.
          Length = 434

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = +1

Query: 304 ERQKHRRASKETSFKETKGVKGSNMLTTSRETIEGRHVGRKWTDGRVAGHPTTKRRDRIA 483
           ++   +  S+E + KE    KG   L +S E  E RH  ++    R   H  ++ R+R  
Sbjct: 77  DKSSKKHKSEEHNDKEHSSDKGRERLNSS-ENGEDRHKRKERKSSRGRSHSRSRSRERRH 135

Query: 484 ESKTREYSDASIRVLE 531
            S++RE   +  R  E
Sbjct: 136 RSRSRERKKSRSRSRE 151


>AB212664-1|BAE93762.1|  434|Homo sapiens hypothetical protein
           protein.
          Length = 434

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 21/76 (27%), Positives = 35/76 (46%)
 Frame = +1

Query: 304 ERQKHRRASKETSFKETKGVKGSNMLTTSRETIEGRHVGRKWTDGRVAGHPTTKRRDRIA 483
           ++   +  S+E + KE    KG   L +S E  E RH  ++    R   H  ++ R+R  
Sbjct: 77  DKSSKKHKSEEHNDKEHSSDKGRERLNSS-ENGEDRHKRKERKSSRGRSHSRSRSRERRH 135

Query: 484 ESKTREYSDASIRVLE 531
            S++RE   +  R  E
Sbjct: 136 RSRSRERKKSRSRSRE 151


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,431,557
Number of Sequences: 237096
Number of extensions: 2265043
Number of successful extensions: 5092
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5091
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13378564892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)