Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I23
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.42 
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    26   6.8  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 22/87 (25%), Positives = 43/87 (49%)
 Frame = -1

Query: 505 VDLFLHIVLFFTF*VLCICFNFIFSNHLPVYNIIFINLLESRYSINFSIFYTKSISPGIT 326
           + LF  ++LFF F +  + F+F FS  L   + IFI    S   ++F  F+   +   ++
Sbjct: 110 LSLFRCLLLFFFFLLFFLSFSFSFS-FLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLS 168

Query: 325 WRYGFFFVTFNSIVVSPISLSFISTIN 245
           + +    +   +I+  P+ L   ST++
Sbjct: 169 FLFSLSHLLSLAILFLPLLLRVFSTLS 195


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 406 IFINLLESRYSINFSIFYTKSISPGITWRYGFFFVTFNSIVVSPI 272
           +++N  E  Y+ +F  F+ +  +PG      F  V+FN++ V+P+
Sbjct: 533 LYVNNGEKTYTNDF--FFLQGATPGQISFAAFQGVSFNNVTVTPL 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,768
Number of Sequences: 5004
Number of extensions: 62325
Number of successful extensions: 166
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)