Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I22
         (1087 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...    37   0.022

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score = 37.1 bits (82), Expect = 0.022
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 169 VPHPNSDIMDVKCXVLLCXYXSXI-AHAQRVVVXSVDAQRSFAXPTGGRARLTD 327
           V HPNS  MDVKC    C   S + +HA  VVV  V        PT G+A+LT+
Sbjct: 25  VQHPNSYFMDVKCSG--CFKISTVFSHATTVVV-CVGCNTVLCQPTRGKAKLTE 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,554,340
Number of Sequences: 27780
Number of extensions: 120270
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2918964402
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)