Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I21
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   2.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   3.8  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    27   3.8  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   6.7  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   6.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   8.8  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 195 EELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQ 323
           E L +RAL   S L +  ++A  S+++   G +K  +++N+N+
Sbjct: 824 ENLQSRALELESALEQSVSDAKYSKAIMQSGLSKLLSSINENK 866


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +3

Query: 135 ESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN 314
           ES   PP SSSS   +   +  LP R L        +  ++LS Q  GS  S  R+++ +
Sbjct: 417 ESPPPPPISSSSTTPRPDDKPSLPPRGL-------SEDNDSLSLQKTGS--SDTRRSSFS 467

Query: 315 KNQIPKTNV 341
             +IP +++
Sbjct: 468 TLKIPDSDI 476


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +3

Query: 102 MSQIAEEQKLEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGS 281
           +  IA++ K E +D L P  S+   A EKP +      L+        ++ A+       
Sbjct: 67  LKNIAKKNKRERNDKLIPQQSNESEAIEKPVQSTTEVELKTNELAESNSSVAVEGDENSY 126

Query: 282 GGSAKRKTAL 311
             + K+K +L
Sbjct: 127 AETPKKKHSL 136


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 22/84 (26%), Positives = 41/84 (48%)
 Frame = +3

Query: 147 LPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQI 326
           + P+SSSS AA         + +L   +TLT  + +A+SS +     S+   ++++ +  
Sbjct: 108 IDPSSSSSSAASSTT-STTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSF 166

Query: 327 PKTNVHSGGDGCLLLERTTLSGIP 398
             T++ S G   +L    T S +P
Sbjct: 167 --TSLSSSGFSTVLSSTNTTSALP 188


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -3

Query: 447 WNMHQVAILGHYHLELKEYHLEWFSLIIDNRPHQN-EHWF*GSDSYLRLSFFLHCHHSQQ 271
           W M       +  +E  +  LE+F LI ++ P QN   W+     YL L  + H     +
Sbjct: 431 WGMLYDIAKAYMDIERLDLALEYFVLICNHEPAQNIGLWYNMGVCYLELKEYEHAQQCME 490


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 228  STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKT 335
            STL    +++  S S+G G S    + +  N++P T
Sbjct: 3649 STLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPST 3684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,191
Number of Sequences: 5004
Number of extensions: 35761
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)