Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I20
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.38 
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    29   0.66 
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   6.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   8.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   8.1  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 535 EINCY--NEPKAKI-VLLLNLKSPEDAVPFYKLPMKTLLHIYKVTMNDVEN 678
           + N Y  N  K+ I V + ++KSPE A+    +P+  LLH    T + VEN
Sbjct: 676 QTNAYIENNKKSSIKVAVFDVKSPEKAIATVSVPLPELLHEGYDTFHFVEN 726


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = +1

Query: 568 IVLLLNLKSPEDAVPFYKLPMKTLLHIYKVTMNDVENGFCENRLYYLASRLKCSPXG--- 738
           I +LLN     + V      +  L+HIYK  M ++ N      L  + S L  +P G   
Sbjct: 742 ISILLNSIDMNELVDVLSF-ISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDD 800

Query: 739 -LCENXLKEXXLLLII*LVEKCLNILL 816
            + +N L++  +  I+ L+ K    +L
Sbjct: 801 AVKQNDLRKSYISFILQLLNKGFGSIL 827


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 577 LLNLKSPEDAVPFYKLPMKTLLHIYKVTMNDV 672
           LLNL+SP+ +     L +K+  +I KVT ND+
Sbjct: 331 LLNLRSPKSSGKADNLTIKSSSNIDKVTSNDL 362


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 598 EDAVPFYKLPMKTLLHIYK--VTMNDVENGFCENRLYYLASRLKCSPXGLCE 747
           +D  P  K  ++TLLH++K  VT  D++    EN L      LK S  GL +
Sbjct: 269 QDCKPLLKQLLETLLHLHKQGVTHRDIKP---ENILITNDFHLKISDFGLAK 317


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 631 SLVACRMAQHPLEISSLIVKLFLLLVHCSNLSHLLYSILEFVQ 503
           S +AC +++  ++   +  KLF  L+H SNL   +  ++   Q
Sbjct: 178 SKLACIISKPAVKTPEIYSKLFHYLLHSSNLKAFINPLIPLTQ 220


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -3

Query: 570 YFCFWFIVAIYLIFCIRF*SLYRYINLVIDNFVFAHIIEI*PQNIPKTIIRMR---PYEK 400
           +FCF+F  +++  F   F SL  + N         H+++I  Q    +++      P + 
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSL--HFNFFFRLCRHKHLLDIPDQTTLSSLLHRHTRLPRDV 164

Query: 399 RRNH 388
           RR H
Sbjct: 165 RRKH 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,921
Number of Sequences: 5004
Number of extensions: 54648
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)