Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I20
         (875 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X54147-1|CAA38086.1|  426|Drosophila melanogaster VLP protein pr...    31   2.1  
X13719-1|CAA31997.1|  426|Drosophila melanogaster protein ( Dros...    31   2.1  
X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical p...    31   2.1  
X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein ( Dros...    31   2.1  
X02599-2|CAA26445.1|  426|Drosophila melanogaster ORF protein.         31   2.1  
X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprot...    31   2.1  
BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p pro...    31   2.1  

>X54147-1|CAA38086.1|  426|Drosophila melanogaster VLP protein
           protein.
          Length = 426

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 436 NVLWLNFNNVCKNKIIYNQIYVPVQTLKSNTKDEINCYN 552
           N +  N NN  KN +  N++  P +  K N+K ++ C++
Sbjct: 196 NAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHH 234


>X13719-1|CAA31997.1|  426|Drosophila melanogaster protein (
           Drosophila melanogastercopia-specific 2.1-kb mRNA for
           31-kD copia  protein and17-kD viral protease.  ).
          Length = 426

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 436 NVLWLNFNNVCKNKIIYNQIYVPVQTLKSNTKDEINCYN 552
           N +  N NN  KN +  N++  P +  K N+K ++ C++
Sbjct: 196 NAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHH 234


>X04456-1|CAA28054.2| 1409|Drosophila melanogaster hypothetical
           protein protein.
          Length = 1409

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 436 NVLWLNFNNVCKNKIIYNQIYVPVQTLKSNTKDEINCYN 552
           N +  N NN  KN +  N++  P +  K N+K ++ C++
Sbjct: 196 NAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHH 234


>X02600-1|CAA26447.1| 1288|Drosophila melanogaster protein (
           Drosophila melanogastervirus like particle RNA (VLP
           H-RNA). ).
          Length = 1288

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 436 NVLWLNFNNVCKNKIIYNQIYVPVQTLKSNTKDEINCYN 552
           N +  N NN  KN +  N++  P +  K N+K ++ C++
Sbjct: 196 NAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHH 234


>X02599-2|CAA26445.1|  426|Drosophila melanogaster ORF protein.
          Length = 426

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 436 NVLWLNFNNVCKNKIIYNQIYVPVQTLKSNTKDEINCYN 552
           N +  N NN  KN +  N++  P +  K N+K ++ C++
Sbjct: 196 NAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHH 234


>X02599-1|CAA26444.1| 1409|Drosophila melanogaster 31 KD polyprotein
           protein.
          Length = 1409

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 436 NVLWLNFNNVCKNKIIYNQIYVPVQTLKSNTKDEINCYN 552
           N +  N NN  KN +  N++  P +  K N+K ++ C++
Sbjct: 196 NAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHH 234


>BT011428-1|AAR99086.1| 1409|Drosophila melanogaster SD14423p
           protein.
          Length = 1409

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 436 NVLWLNFNNVCKNKIIYNQIYVPVQTLKSNTKDEINCYN 552
           N +  N NN  KN +  N++  P +  K N+K ++ C++
Sbjct: 196 NAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHH 234


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,695,183
Number of Sequences: 53049
Number of extensions: 511496
Number of successful extensions: 927
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)