Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_I19
(974 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.035
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.43
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.75
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 29 0.99
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.3
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 4.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.0
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 9.3
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.9 bits (74), Expect = 0.035
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = +3
Query: 615 PPNPGXXPPXX---PPPXAKRXRPTGPRAPVKXXPSXXXXTXXXGPPPPPXQXVXXXTXA 785
PP+P PP PP + P P APVK PS PP PP + A
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAV-PPMPPKVPPPPLSQA 209
Query: 786 PXXSXGXPXPXAXAP 830
P + P + AP
Sbjct: 210 PVANTS-SRPSSFAP 223
Score = 27.5 bits (58), Expect = 3.0
Identities = 23/89 (25%), Positives = 24/89 (26%)
Frame = +3
Query: 588 PPXXXGRGXPPNPGXXPPXXPPPXAKRXRPTGPRAPVKXXPSXXXXTXXXGPPPPPXQXV 767
PP PP P PPP P +AP PS PP P V
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP--PIPSSLP------PPAQPAAPV 181
Query: 768 XXXTXAPXXSXGXPXPXAXAPXXPRXAXP 854
AP P P P P
Sbjct: 182 KSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.43
Identities = 25/90 (27%), Positives = 26/90 (28%), Gaps = 6/90 (6%)
Frame = +3
Query: 588 PPXXXGRGXPPNPGXX---PPXXPPPXAKRXRPTGPRAPVKXXPSXXXX---TXXXGPPP 749
PP G PP P PP P A P AP PS PP
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 750 PPXQXVXXXTXAPXXSXGXPXPXAXAPXXP 839
P AP + P P AP P
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/89 (24%), Positives = 25/89 (28%)
Frame = +3
Query: 591 PXXXGRGXPPNPGXXPPXXPPPXAKRXRPTGPRAPVKXXPSXXXXTXXXGPPPPPXQXVX 770
P G P P PP P A P P+ V P PP P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAA---PPVPKPSVAVPP---VPAPSGAPPVPKPSVAA 1130
Query: 771 XXTXAPXXSXGXPXPXAXAPXXPRXAXPP 857
P + P P AP P + P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Score = 27.9 bits (59), Expect = 2.3
Identities = 25/92 (27%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Frame = +3
Query: 588 PPXXXGRGXPP--NPGXXPPXXP------PPXAKRXRPTGPRAPVKXXPSXXXXTXXXGP 743
PP G PP P P P PP K P P P + P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 744 PPPPXQXVXXXTXAPXXSXGXPXPXAXAPXXP 839
PPP T + P P A AP P
Sbjct: 1210 VPPPSTAPPVPTPSAGLPP-VPVPTAKAPPVP 1240
Score = 25.8 bits (54), Expect = 9.3
Identities = 20/81 (24%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Frame = +3
Query: 624 PGXXPPXXPPPXAKRXRPTGPRAPVKXXPSXXXXTXXXG---PPPPPXQXVXXXTXAPXX 794
P PP P P AP PS PP P AP
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119
Query: 795 SXGXPXPXAXAPXXPRXAXPP 857
+ P P AP P + P
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAP 1140
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.75
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +1
Query: 742 PPPPLARXXXAXPXPPRXXXGXQXPXRGPPXXPGXRPPP 858
PPPP + + P PP+ P G +PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/87 (25%), Positives = 26/87 (29%), Gaps = 7/87 (8%)
Frame = +3
Query: 588 PPXXXGRGXPP-----NPGXXPPXXPPPXAKRXR--PTGPRAPVKXXPSXXXXTXXXGPP 746
PP RG PP + PP PPP + P P+ P G
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ 375
Query: 747 PPPXQXVXXXTXAPXXSXGXPXPXAXA 827
PPP + P P A A
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPA 402
Score = 28.3 bits (60), Expect = 1.7
Identities = 31/131 (23%), Positives = 34/131 (25%), Gaps = 2/131 (1%)
Frame = +3
Query: 588 PPXXXGRGXPPNP--GXXPPXXPPPXAKRXRPTGPRAPVKXXPSXXXXTXXXGPPPPPXQ 761
PP G P P G P PPP R P+ R P S PP P +
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPP---RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398
Query: 762 XVXXXTXAPXXSXGXPXPXAXAPXXPRXAXPPXXXXXXXXXXXXXXXXXXXXPPARRXXP 941
S P P P A PP PP+ P
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSA-PPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
Query: 942 XXDPXEAAXPP 974
A PP
Sbjct: 458 PLPAGMPAAPP 468
Score = 26.6 bits (56), Expect = 5.3
Identities = 25/95 (26%), Positives = 28/95 (29%), Gaps = 4/95 (4%)
Frame = +3
Query: 585 QPPXXXGRGXPPNPGXXPPXXPPPXAKRXRPTGPRAPVKXXPSXXXXTXXXGPPP--PPX 758
QPP NP PP P A P G + P + PP PP
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS 434
Query: 759 QXVXXXTXAPXXSXGXPXPXAXAPXXP--RXAXPP 857
AP + P AP P A PP
Sbjct: 435 APPSLPMGAP-AAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 26.2 bits (55), Expect = 7.0
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Frame = +3
Query: 639 PXXPPPXAKRXRPTGPRAPVKXXPSXXXXTXXXGPPPPPXQXVXXXTXAP--XXSXGXPX 812
P PPP ++R R + P+ S + PPPPP P S P
Sbjct: 311 PPPPPPPSRRNRG---KPPIGNGSSN---SSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Query: 813 PXAXAPXXPRXAXP 854
P AP R P
Sbjct: 365 PPRSAPSTGRQPPP 378
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.99
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 709 GXXFTGALGPVGRXRLAXGGGSXGGXXPGF 620
G + A GP+GR A GG S GG P F
Sbjct: 125 GGNLSIAAGPLGRNAEAGGGASVGGMAPMF 154
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 648 PPPXAKRXRPTGPRAPVKXXPSXXXXTXXXGPPPPP 755
PPP PT AP+ P PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 27.1 bits (57), Expect = 4.0
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +3
Query: 588 PPXXXGRGXPPNPGXXPPXXPPPXAKRXRPTGPRAPVKXXPSXXXXTXXXGPPPPP 755
PP P P P PPP P P P P PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP----PGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Frame = +1
Query: 742 PPPPLARXXXAXPXP-----PRXXXGXQXPXRGPPXXPGXRPPP 858
PPPP P P P G P PP G PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 23.4 bits (48), Expect(2) = 4.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 441 PPPPPPXP 418
PPPPPP P
Sbjct: 775 PPPPPPPP 782
Score = 21.4 bits (43), Expect(2) = 4.8
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 459 PXXRXXPPPPPP 424
P PPPPPP
Sbjct: 756 PIMGGPPPPPPP 767
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 585 QPPXXXGRGXPPNPGXXPPXXPPPXAKRXRPTGPR 689
QPP R P G PP P K P GPR
Sbjct: 10 QPPPNDSRSSTPATG-PPPPIPKIKIKTREPKGPR 43
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 615 PPNPGXXPPXXPPP 656
PP PG PP PPP
Sbjct: 13 PPPPGFEPPSQPPP 26
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = -2
Query: 700 FTGALGPVGRXRLAXGGG--SXGGXXPGFGGXPLPXXXGGW 584
F G G G GGG GG GFGG P GW
Sbjct: 233 FEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 614 PPKSXXPPPXRXTXXSQAXPPNXAQG 691
PP++ PPP + QA PP QG
Sbjct: 27 PPRTMAPPPA-PSRVQQAPPPTAVQG 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,830,782
Number of Sequences: 5004
Number of extensions: 23162
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -