Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I16
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.18 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
 Frame = -2

Query: 638 FGXFGKKXFXGXXPXFGGRXXXPXGGGXXXXPPXX----PGGXGFXXGGXGXGPKXXXPX 471
           FG FG   F G     GG      G G     P      PGG G   GG G GP      
Sbjct: 207 FGGFG--GFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264

Query: 470 PXGGG 456
           P G G
Sbjct: 265 PGGHG 269



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 563 GGXXXXPPXXPGGXGFXXGGXGXGPKXXXPXPXGGG 456
           GG    PP  PGG G   G  G G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = +1

Query: 397 FXXXGGGGGGXGIFXXXKKXPPPXGXGXXFLGPXPXPPXKNPXPPGFXGGXXXXPPPXGX 576
           F   G  GGG G F      PPP   G    G        +    GF GG        G 
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239

Query: 577 F 579
           F
Sbjct: 240 F 240


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/53 (30%), Positives = 16/53 (30%)
 Frame = +1

Query: 451 KXPPPXGXGXXFLGPXPXPPXKNPXPPGFXGGXXXXPPPXGXFXLPPXXGXXP 609
           K PPP         P P P    P  P   G     PPP      PP     P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,807
Number of Sequences: 5004
Number of extensions: 19692
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)