Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_I15
(1038 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L41162-1|AAC41947.1| 684|Homo sapiens alpha-3 type IX collagen ... 36 0.32
BT009917-1|AAP88919.1| 744|Homo sapiens collagen, type VIII, al... 34 0.98
BC035907-1|AAH35907.1| 308|Homo sapiens USP51 protein protein. 34 0.98
BC013581-1|AAH13581.1| 744|Homo sapiens collagen, type VIII, al... 34 0.98
AY550974-1|AAT52220.1| 745|Homo sapiens cell proliferation-indu... 34 0.98
AJ583823-1|CAE47750.2| 711|Homo sapiens ubiquitin specific prot... 34 0.98
U73778-1|AAC51244.1| 3063|Homo sapiens collagen type XII alpha-1... 33 1.3
AL354664-1|CAH71310.1| 3063|Homo sapiens collagen type XII alpha... 33 1.3
AL096771-4|CAM28081.1| 317|Homo sapiens collagen type XII alpha... 33 1.3
AL096771-3|CAI19908.1| 3063|Homo sapiens collagen type XII alpha... 33 1.3
AL080250-2|CAI19898.1| 3063|Homo sapiens collagen type XII alpha... 33 1.3
U94832-1|AAB53222.1| 711|Homo sapiens KSRP protein. 33 2.3
AF093747-1|AAD29861.1| 115|Homo sapiens KH type splicing regula... 33 2.3
BC011705-1|AAH11705.1| 684|Homo sapiens collagen, type IX, alph... 32 3.0
AL035669-11|CAI95767.2| 191|Homo sapiens collagen type IX alpha... 32 3.0
AL035669-10|CAC12750.1| 684|Homo sapiens collagen type IX alpha... 32 3.0
AF026802-1|AAD47357.1| 684|Homo sapiens alpha-3 type IX collage... 32 3.0
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr... 31 5.2
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 31 5.2
U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 ... 31 5.2
U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 ... 31 5.2
M90464-1|AAA52046.1| 910|Homo sapiens alpha-5 type IV collagen ... 31 5.2
M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen ... 31 5.2
BC035387-1|AAH35387.1| 695|Homo sapiens COL4A5 protein protein. 31 5.2
BC032638-1|AAH32638.1| 411|Homo sapiens methyl-CpG binding doma... 31 5.2
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 31 5.2
AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha ... 31 5.2
AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha ... 31 5.2
AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha ... 31 5.2
AF120993-1|AAD56597.1| 411|Homo sapiens methyl-CpG binding prot... 31 5.2
AF120989-1|AAD56596.1| 302|Homo sapiens testis-specific methyl-... 31 5.2
AF072242-1|AAC68871.1| 411|Homo sapiens methyl-CpG binding prot... 31 5.2
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 31 5.2
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 31 6.9
X57527-1|CAA40748.1| 744|Homo sapiens alpha 1(VIII) collagen pr... 31 9.1
>L41162-1|AAC41947.1| 684|Homo sapiens alpha-3 type IX collagen
protein.
Length = 684
Score = 35.5 bits (78), Expect = 0.32
Identities = 33/116 (28%), Positives = 35/116 (30%), Gaps = 5/116 (4%)
Frame = -2
Query: 557 RXFPXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXPXLPXX 378
R P G +RG P G GG G G P G G R P G P LP
Sbjct: 90 RDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPPGLPGL 149
Query: 377 RFSXXP-----XXXVXPXXXXPLXGWXPXPPXPXGXXXXGGXFPXXGHXGLGGXXG 225
P V P L PP P G G G+ G G G
Sbjct: 150 PGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVG 205
Score = 31.5 bits (68), Expect = 5.2
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Frame = +2
Query: 236 PXAPNAPXXEKXPPXXXXPRXXGGXG-PXQXGAXXGXGQPXTKG-RGKXGTXAXXGXLGA 409
P P E+ P GG G P G G P G RG G G G
Sbjct: 93 PPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPPGLPGLPG- 151
Query: 410 XXXPPXPXGNPAHP 451
PP P G P HP
Sbjct: 152 ---PPGPPGPPGHP 162
>BT009917-1|AAP88919.1| 744|Homo sapiens collagen, type VIII, alpha
1 protein.
Length = 744
Score = 33.9 bits (74), Expect = 0.98
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -3
Query: 352 GLXXPXXXPXLXGXPXPXXPXGXXXXGGFFXXGGIXGXGGPXG 224
G+ P P L G P P P G G GGI G GP G
Sbjct: 384 GIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPG 426
>BC035907-1|AAH35907.1| 308|Homo sapiens USP51 protein protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.98
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +1
Query: 697 PGIPXXPTXGARPXPXXXPPAPGKTPRHHXRXXRXXRXPXPXGDRPKXRR 846
PG+ P ARP P PP P P R R R G RP+ RR
Sbjct: 118 PGLSAPPPPPARPPPPPPPPPP---PAPRPRAWRGSRRRSRPGSRPQTRR 164
>BC013581-1|AAH13581.1| 744|Homo sapiens collagen, type VIII, alpha
1 protein.
Length = 744
Score = 33.9 bits (74), Expect = 0.98
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -3
Query: 352 GLXXPXXXPXLXGXPXPXXPXGXXXXGGFFXXGGIXGXGGPXG 224
G+ P P L G P P P G G GGI G GP G
Sbjct: 384 GIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPG 426
>AY550974-1|AAT52220.1| 745|Homo sapiens cell
proliferation-inducing protein 41 protein.
Length = 745
Score = 33.9 bits (74), Expect = 0.98
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -3
Query: 352 GLXXPXXXPXLXGXPXPXXPXGXXXXGGFFXXGGIXGXGGPXG 224
G+ P P L G P P P G G GGI G GP G
Sbjct: 385 GIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPG 427
>AJ583823-1|CAE47750.2| 711|Homo sapiens ubiquitin specific
proteinase 51 protein.
Length = 711
Score = 33.9 bits (74), Expect = 0.98
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +1
Query: 697 PGIPXXPTXGARPXPXXXPPAPGKTPRHHXRXXRXXRXPXPXGDRPKXRR 846
PG+ P ARP P PP P P R R R G RP+ RR
Sbjct: 118 PGLSAPPPPPARPPPPPPPPPP---PAPRPRAWRGSRRRSRPGSRPQTRR 164
>U73778-1|AAC51244.1| 3063|Homo sapiens collagen type XII alpha-1
protein.
Length = 3063
Score = 33.5 bits (73), Expect = 1.3
Identities = 20/73 (27%), Positives = 24/73 (32%)
Frame = +2
Query: 230 GXPXAPNAPXXEKXPPXXXXPRXXGGXGPXQXGAXXGXGQPXTKGRGKXGTXAXXGXLGA 409
G P P P + P P G G G G P +G + G G G
Sbjct: 2963 GRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRG- 3021
Query: 410 XXXPPXPXGNPAH 448
PP P G P +
Sbjct: 3022 ---PPGPPGRPGN 3031
>AL354664-1|CAH71310.1| 3063|Homo sapiens collagen type XII alpha 1
protein.
Length = 3063
Score = 33.5 bits (73), Expect = 1.3
Identities = 20/73 (27%), Positives = 24/73 (32%)
Frame = +2
Query: 230 GXPXAPNAPXXEKXPPXXXXPRXXGGXGPXQXGAXXGXGQPXTKGRGKXGTXAXXGXLGA 409
G P P P + P P G G G G P +G + G G G
Sbjct: 2963 GRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRG- 3021
Query: 410 XXXPPXPXGNPAH 448
PP P G P +
Sbjct: 3022 ---PPGPPGRPGN 3031
>AL096771-4|CAM28081.1| 317|Homo sapiens collagen type XII alpha 1
protein.
Length = 317
Score = 33.5 bits (73), Expect = 1.3
Identities = 20/73 (27%), Positives = 24/73 (32%)
Frame = +2
Query: 230 GXPXAPNAPXXEKXPPXXXXPRXXGGXGPXQXGAXXGXGQPXTKGRGKXGTXAXXGXLGA 409
G P P P + P P G G G G P +G + G G G
Sbjct: 162 GRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRG- 220
Query: 410 XXXPPXPXGNPAH 448
PP P G P +
Sbjct: 221 ---PPGPPGRPGN 230
>AL096771-3|CAI19908.1| 3063|Homo sapiens collagen type XII alpha 1
protein.
Length = 3063
Score = 33.5 bits (73), Expect = 1.3
Identities = 20/73 (27%), Positives = 24/73 (32%)
Frame = +2
Query: 230 GXPXAPNAPXXEKXPPXXXXPRXXGGXGPXQXGAXXGXGQPXTKGRGKXGTXAXXGXLGA 409
G P P P + P P G G G G P +G + G G G
Sbjct: 2963 GRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRG- 3021
Query: 410 XXXPPXPXGNPAH 448
PP P G P +
Sbjct: 3022 ---PPGPPGRPGN 3031
>AL080250-2|CAI19898.1| 3063|Homo sapiens collagen type XII alpha 1
protein.
Length = 3063
Score = 33.5 bits (73), Expect = 1.3
Identities = 20/73 (27%), Positives = 24/73 (32%)
Frame = +2
Query: 230 GXPXAPNAPXXEKXPPXXXXPRXXGGXGPXQXGAXXGXGQPXTKGRGKXGTXAXXGXLGA 409
G P P P + P P G G G G P +G + G G G
Sbjct: 2963 GRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRG- 3021
Query: 410 XXXPPXPXGNPAH 448
PP P G P +
Sbjct: 3022 ---PPGPPGRPGN 3031
>U94832-1|AAB53222.1| 711|Homo sapiens KSRP protein.
Length = 711
Score = 32.7 bits (71), Expect = 2.3
Identities = 19/60 (31%), Positives = 21/60 (35%)
Frame = -2
Query: 548 PXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXPXLPXXRFS 369
P G G G PP G G G G CGGG G G G P + F+
Sbjct: 16 PAGGGGGAGGAGGGPPPGPPGAGDRGGGGPCGGGPGGGSAGGPSQPPGGGGPGIRKDAFA 75
>AF093747-1|AAD29861.1| 115|Homo sapiens KH type splicing
regulatory protein protein.
Length = 115
Score = 32.7 bits (71), Expect = 2.3
Identities = 19/60 (31%), Positives = 21/60 (35%)
Frame = -2
Query: 548 PXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXPXLPXXRFS 369
P G G G PP G G G G CGGG G G G P + F+
Sbjct: 16 PAGGGGGAGGAGGGPPPGPPGAGDRGGGGPCGGGPGGGSAGGPSQPPGGGGPGIRKDAFA 75
>BC011705-1|AAH11705.1| 684|Homo sapiens collagen, type IX, alpha 3
protein.
Length = 684
Score = 32.3 bits (70), Expect = 3.0
Identities = 32/116 (27%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Frame = -2
Query: 557 RXFPXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXPXLPXX 378
R P G +RG P G GG G G P G G R P G LP
Sbjct: 90 RDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGL 149
Query: 377 RFSXXP-----XXXVXPXXXXPLXGWXPXPPXPXGXXXXGGXFPXXGHXGLGGXXG 225
P V P L PP P G G G+ G G G
Sbjct: 150 PGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVG 205
Score = 31.5 bits (68), Expect = 5.2
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Frame = +2
Query: 236 PXAPNAPXXEKXPPXXXXPRXXGGXG-PXQXGAXXGXGQPXTKG-RGKXGTXAXXGXLGA 409
P P E+ P GG G P G G P G RG G G G
Sbjct: 93 PPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPG- 151
Query: 410 XXXPPXPXGNPAHP 451
PP P G P HP
Sbjct: 152 ---PPGPPGPPGHP 162
>AL035669-11|CAI95767.2| 191|Homo sapiens collagen type IX alpha 3
protein.
Length = 191
Score = 32.3 bits (70), Expect = 3.0
Identities = 32/116 (27%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Frame = -2
Query: 557 RXFPXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXPXLPXX 378
R P G +RG P G GG G G P G G R P G LP
Sbjct: 53 RDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGL 112
Query: 377 RFSXXP-----XXXVXPXXXXPLXGWXPXPPXPXGXXXXGGXFPXXGHXGLGGXXG 225
P V P L PP P G G G+ G G G
Sbjct: 113 PGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVG 168
Score = 31.5 bits (68), Expect = 5.2
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Frame = +2
Query: 236 PXAPNAPXXEKXPPXXXXPRXXGGXG-PXQXGAXXGXGQPXTKG-RGKXGTXAXXGXLGA 409
P P E+ P GG G P G G P G RG G G G
Sbjct: 56 PPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPG- 114
Query: 410 XXXPPXPXGNPAHP 451
PP P G P HP
Sbjct: 115 ---PPGPPGPPGHP 125
>AL035669-10|CAC12750.1| 684|Homo sapiens collagen type IX alpha 3
protein.
Length = 684
Score = 32.3 bits (70), Expect = 3.0
Identities = 32/116 (27%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Frame = -2
Query: 557 RXFPXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXPXLPXX 378
R P G +RG P G GG G G P G G R P G LP
Sbjct: 90 RDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGL 149
Query: 377 RFSXXP-----XXXVXPXXXXPLXGWXPXPPXPXGXXXXGGXFPXXGHXGLGGXXG 225
P V P L PP P G G G+ G G G
Sbjct: 150 PGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVG 205
Score = 31.5 bits (68), Expect = 5.2
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Frame = +2
Query: 236 PXAPNAPXXEKXPPXXXXPRXXGGXG-PXQXGAXXGXGQPXTKG-RGKXGTXAXXGXLGA 409
P P E+ P GG G P G G P G RG G G G
Sbjct: 93 PPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPG- 151
Query: 410 XXXPPXPXGNPAHP 451
PP P G P HP
Sbjct: 152 ---PPGPPGPPGHP 162
>AF026802-1|AAD47357.1| 684|Homo sapiens alpha-3 type IX collagen
protein.
Length = 684
Score = 32.3 bits (70), Expect = 3.0
Identities = 32/116 (27%), Positives = 34/116 (29%), Gaps = 5/116 (4%)
Frame = -2
Query: 557 RXFPXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXPXLPXX 378
R P G +RG P G GG G G P G G R P G LP
Sbjct: 90 RDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGL 149
Query: 377 RFSXXP-----XXXVXPXXXXPLXGWXPXPPXPXGXXXXGGXFPXXGHXGLGGXXG 225
P V P L PP P G G G+ G G G
Sbjct: 150 PGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVG 205
Score = 31.5 bits (68), Expect = 5.2
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Frame = +2
Query: 236 PXAPNAPXXEKXPPXXXXPRXXGGXG-PXQXGAXXGXGQPXTKG-RGKXGTXAXXGXLGA 409
P P E+ P GG G P G G P G RG G G G
Sbjct: 93 PPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPG- 151
Query: 410 XXXPPXPXGNPAHP 451
PP P G P HP
Sbjct: 152 ---PPGPPGPPGHP 162
>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
protein.
Length = 1078
Score = 31.5 bits (68), Expect = 5.2
Identities = 42/180 (23%), Positives = 47/180 (26%)
Frame = -2
Query: 764 PGAGGXXXGXGRAPXVGXXGIPGPVXXXXXXXXXXXXXXXPXXXPLXXXXXXXXXXGXGR 585
PGA G G G G PGP P G
Sbjct: 602 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP 661
Query: 584 GXRPXXXXRRXFPXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXP 405
P + P G G +RG P G G GG P G G +
Sbjct: 662 AGFPGAPGQNGEPGGKG----ERG--APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGE 715
Query: 404 LGXPXLPXXRFSXXPXXXVXPXXXXPLXGWXPXPPXPXGXXXXGGXFPXXGHXGLGGXXG 225
G P P + P P P P PP P G G G+ G G G
Sbjct: 716 RGSPGGPGA--AGFPGARGLP--GPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPG 771
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 collagen
protein.
Length = 1466
Score = 31.5 bits (68), Expect = 5.2
Identities = 42/180 (23%), Positives = 47/180 (26%)
Frame = -2
Query: 764 PGAGGXXXGXGRAPXVGXXGIPGPVXXXXXXXXXXXXXXXPXXXPLXXXXXXXXXXGXGR 585
PGA G G G G PGP P G
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP 808
Query: 584 GXRPXXXXRRXFPXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXP 405
P + P G G +RG P G G GG P G G +
Sbjct: 809 AGFPGAPGQNGEPGGKG----ERG--APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGE 862
Query: 404 LGXPXLPXXRFSXXPXXXVXPXXXXPLXGWXPXPPXPXGXXXXGGXFPXXGHXGLGGXXG 225
G P P + P P P P PP P G G G+ G G G
Sbjct: 863 RGSPGGPGA--AGFPGARGLP--GPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPG 918
>U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5
chain protein.
Length = 1685
Score = 31.5 bits (68), Expect = 5.2
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = -1
Query: 450 GXAGLPXGXGGXXXAPRXPXFAXVPXFPRPXVXGXPXPXXAPXWXGPXPPXXRGXXXXGG 271
G G P G G AP P + P P G P P P + P PP G G
Sbjct: 713 GPKGFP-GIPGPPGAPGTPGRIGLEGPPGPP--GFPGPKGEPGFALPGPPGPPGLPGFKG 769
Query: 270 XFSXXGAXGAXGXP 229
G G G P
Sbjct: 770 ALGPKGDRGFPGPP 783
>U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5
chain protein.
Length = 1691
Score = 31.5 bits (68), Expect = 5.2
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = -1
Query: 450 GXAGLPXGXGGXXXAPRXPXFAXVPXFPRPXVXGXPXPXXAPXWXGPXPPXXRGXXXXGG 271
G G P G G AP P + P P G P P P + P PP G G
Sbjct: 713 GPKGFP-GIPGPPGAPGTPGRIGLEGPPGPP--GFPGPKGEPGFALPGPPGPPGLPGFKG 769
Query: 270 XFSXXGAXGAXGXP 229
G G G P
Sbjct: 770 ALGPKGDRGFPGPP 783
>M90464-1|AAA52046.1| 910|Homo sapiens alpha-5 type IV collagen
protein.
Length = 910
Score = 31.5 bits (68), Expect = 5.2
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = -1
Query: 450 GXAGLPXGXGGXXXAPRXPXFAXVPXFPRPXVXGXPXPXXAPXWXGPXPPXXRGXXXXGG 271
G G P G G AP P + P P G P P P + P PP G G
Sbjct: 713 GPKGFP-GIPGPPGAPGTPGRIGLEGPPGPP--GFPGPKGEPGFALPGPPGPPGLPGFKG 769
Query: 270 XFSXXGAXGAXGXP 229
G G G P
Sbjct: 770 ALGPKGDRGFPGPP 783
>M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen
protein.
Length = 1604
Score = 31.5 bits (68), Expect = 5.2
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = -1
Query: 450 GXAGLPXGXGGXXXAPRXPXFAXVPXFPRPXVXGXPXPXXAPXWXGPXPPXXRGXXXXGG 271
G G P G G AP P + P P G P P P + P PP G G
Sbjct: 632 GPKGFP-GIPGPPGAPGTPGRIGLEGPPGPP--GFPGPKGEPGFALPGPPGPPGLPGFKG 688
Query: 270 XFSXXGAXGAXGXP 229
G G G P
Sbjct: 689 ALGPKGDRGFPGPP 702
>BC035387-1|AAH35387.1| 695|Homo sapiens COL4A5 protein protein.
Length = 695
Score = 31.5 bits (68), Expect = 5.2
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = -1
Query: 450 GXAGLPXGXGGXXXAPRXPXFAXVPXFPRPXVXGXPXPXXAPXWXGPXPPXXRGXXXXGG 271
G G P G G AP P + P P G P P P + P PP G G
Sbjct: 321 GPKGFP-GIPGPPGAPGTPGRIGLEGPPGPP--GFPGPKGEPGFALPGPPGPPGLPGFKG 377
Query: 270 XFSXXGAXGAXGXP 229
G G G P
Sbjct: 378 ALGPKGDRGFPGPP 391
>BC032638-1|AAH32638.1| 411|Homo sapiens methyl-CpG binding domain
protein 2 protein.
Length = 411
Score = 31.5 bits (68), Expect = 5.2
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = -2
Query: 509 RPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXP 393
RPP G GG G G CGGG G G A R P+ P
Sbjct: 96 RPPSGGSGLGGDGGG--CGGGGSG--GGGAPRREPVPFP 130
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 31.5 bits (68), Expect = 5.2
Identities = 42/180 (23%), Positives = 47/180 (26%)
Frame = -2
Query: 764 PGAGGXXXGXGRAPXVGXXGIPGPVXXXXXXXXXXXXXXXPXXXPLXXXXXXXXXXGXGR 585
PGA G G G G PGP P G
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP 808
Query: 584 GXRPXXXXRRXFPXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXP 405
P + P G G +RG P G G GG P G G +
Sbjct: 809 AGFPGAPGQNGEPGGKG----ERG--APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGE 862
Query: 404 LGXPXLPXXRFSXXPXXXVXPXXXXPLXGWXPXPPXPXGXXXXGGXFPXXGHXGLGGXXG 225
G P P + P P P P PP P G G G+ G G G
Sbjct: 863 RGSPGGPGA--AGFPGARGLP--GPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPG 918
>AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.5 bits (68), Expect = 5.2
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = -1
Query: 450 GXAGLPXGXGGXXXAPRXPXFAXVPXFPRPXVXGXPXPXXAPXWXGPXPPXXRGXXXXGG 271
G G P G G AP P + P P G P P P + P PP G G
Sbjct: 713 GPKGFP-GIPGPPGAPGTPGRIGLEGPPGPP--GFPGPKGEPGFALPGPPGPPGLPGFKG 769
Query: 270 XFSXXGAXGAXGXP 229
G G G P
Sbjct: 770 ALGPKGDRGFPGPP 783
>AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.5 bits (68), Expect = 5.2
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = -1
Query: 450 GXAGLPXGXGGXXXAPRXPXFAXVPXFPRPXVXGXPXPXXAPXWXGPXPPXXRGXXXXGG 271
G G P G G AP P + P P G P P P + P PP G G
Sbjct: 713 GPKGFP-GIPGPPGAPGTPGRIGLEGPPGPP--GFPGPKGEPGFALPGPPGPPGLPGFKG 769
Query: 270 XFSXXGAXGAXGXP 229
G G G P
Sbjct: 770 ALGPKGDRGFPGPP 783
>AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.5 bits (68), Expect = 5.2
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = -1
Query: 450 GXAGLPXGXGGXXXAPRXPXFAXVPXFPRPXVXGXPXPXXAPXWXGPXPPXXRGXXXXGG 271
G G P G G AP P + P P G P P P + P PP G G
Sbjct: 713 GPKGFP-GIPGPPGAPGTPGRIGLEGPPGPP--GFPGPKGEPGFALPGPPGPPGLPGFKG 769
Query: 270 XFSXXGAXGAXGXP 229
G G G P
Sbjct: 770 ALGPKGDRGFPGPP 783
>AF120993-1|AAD56597.1| 411|Homo sapiens methyl-CpG binding protein
2 protein.
Length = 411
Score = 31.5 bits (68), Expect = 5.2
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = -2
Query: 509 RPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXP 393
RPP G GG G G CGGG G G A R P+ P
Sbjct: 96 RPPSGGSGLGGDGGG--CGGGGSG--GGGAPRREPVPFP 130
>AF120989-1|AAD56596.1| 302|Homo sapiens testis-specific methyl-CpG
binding protein 2 protein.
Length = 302
Score = 31.5 bits (68), Expect = 5.2
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = -2
Query: 509 RPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXP 393
RPP G GG G G CGGG G G A R P+ P
Sbjct: 96 RPPSGGSGLGGDGGG--CGGGGSG--GGGAPRREPVPFP 130
>AF072242-1|AAC68871.1| 411|Homo sapiens methyl-CpG binding protein
MBD2 protein.
Length = 411
Score = 31.5 bits (68), Expect = 5.2
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = -2
Query: 509 RPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXPLGXP 393
RPP G GG G G CGGG G G A R P+ P
Sbjct: 96 RPPSGGSGLGGDGGG--CGGGGSG--GGGAPRREPVPFP 130
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 31.5 bits (68), Expect = 5.2
Identities = 42/180 (23%), Positives = 47/180 (26%)
Frame = -2
Query: 764 PGAGGXXXGXGRAPXVGXXGIPGPVXXXXXXXXXXXXXXXPXXXPLXXXXXXXXXXGXGR 585
PGA G G G G PGP P G
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP 808
Query: 584 GXRPXXXXRRXFPXGXGPVVXDRGLRPPXXXXGXGGXGXGXRCGGGXXGCPXGXAGXRXP 405
P + P G G +RG P G G GG P G G +
Sbjct: 809 AGFPGAPGQNGEPGGKG----ERG--APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGE 862
Query: 404 LGXPXLPXXRFSXXPXXXVXPXXXXPLXGWXPXPPXPXGXXXXGGXFPXXGHXGLGGXXG 225
G P P + P P P P PP P G G G+ G G G
Sbjct: 863 RGSPGGPGA--AGFPGARGLP--GPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPG 918
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 31.1 bits (67), Expect = 6.9
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = -1
Query: 438 LPXGXGGXXXAPRXPXFAXVPXFPRPXVXGXPXPXXAPXWXGPXPP 301
LP G G AP P + P P P P P P GP PP
Sbjct: 306 LPSGLGSLSPAPPMPPVSAGPPLPPP--PPPPPPLPPPSSAGPPPP 349
>X57527-1|CAA40748.1| 744|Homo sapiens alpha 1(VIII) collagen
protein.
Length = 744
Score = 30.7 bits (66), Expect = 9.1
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -3
Query: 352 GLXXPXXXPXLXGXPXPXXPXGXXXXGGFFXXGGIXGXGGPXG 224
G+ P L G P P P G G GGI G GP G
Sbjct: 384 GIGGSPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPG 426
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,215,757
Number of Sequences: 237096
Number of extensions: 1345549
Number of successful extensions: 13634
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 3724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12380
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14041964804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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