Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I14
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    29   0.043
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   0.92 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    25   1.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   1.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.5  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 0.043
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 664 HPTNNFRTTLHFKYNFSNSKRFNKHIKIYIKRHLI 560
           H  NN++   + KYN++N+  +NK  K+Y K ++I
Sbjct: 91  HNNNNYKYNYNNKYNYNNN-NYNK--KLYYKNYII 122


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 664 HPTNNFRTTLHFKYNFSNSKRFNKHIKIY 578
           H  NN+    +  YN++N+  +N + K+Y
Sbjct: 91  HNNNNYNNNNYNNYNYNNN-NYNNYKKLY 118


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 198 FTYYYTTHCKKSIWNVQEIFSMSIKLYFYF 109
           + Y Y  +CKK  +N+  I  + I +  Y+
Sbjct: 96  YKYNYNNNCKKLYYNINYIEQIPIPVPVYY 125


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 658 TNNFRTTLHFKYNFSNSKRFNKH-IKIYIKRHLI 560
           +NN++ + +  YN  N+  +N +  K+Y K ++I
Sbjct: 319 SNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYII 352


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 673 YKQHPTNNFRTTLHFKYNFSNSKRFNKHIKIYI 575
           YK    NN+    +  YN + +  + K  K YI
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYI 121


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 673 YKQHPTNNFRTTLHFKYNFSNSKRFNKHIKIYI 575
           YK    NN+    +  YN + +  + K  K YI
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,800
Number of Sequences: 438
Number of extensions: 3879
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)