Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_I11
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    89   6e-19
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   6.3  
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    26   8.3  

>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 89.4 bits (212), Expect = 6e-19
 Identities = 42/78 (53%), Positives = 61/78 (78%)
 Frame = +1

Query: 220 LRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVP 399
           L+ V  D  GIS ++M I+N+FVND+ E+IA EA +L A+ KK+T+ SREIQ+AV+L++P
Sbjct: 45  LKQVHPDT-GISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTISSREIQTAVRLILP 103

Query: 400 GELATHANSEGMKAISMY 453
           GELA HA +EG K+++ Y
Sbjct: 104 GELAKHAVTEGTKSVTKY 121


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -2

Query: 455 WYMLMAFMPSELACVAS--SPGTSNLTADWISLLPRVFFLPWATSLPASTAIFSSISLTK 282
           W  +++F+ ++   ++   SP   NLT D I L+P   + P    L  S  + +    T+
Sbjct: 318 WLHVISFLWNDYESISKEISPIAINLTLDCIRLIPTEQYYPLRLHLLKS--LVNICRSTR 375

Query: 281 LFM-INIDFLEM 249
           L++ ++  FLEM
Sbjct: 376 LYIPLSSQFLEM 387


>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 378 CRQVTSTGRAGHTRQLRGHEGHKHVPFEQKERLQK 482
           CR  +++ +   T     H G K VP ++KE L K
Sbjct: 32  CRYTSTSSKDTDTSSHMTHFGFKDVPEDEKEHLVK 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,885
Number of Sequences: 5004
Number of extensions: 40948
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)